> > Hi all, > > I have a couple of questions about restarting runs in NpT > > simulations with Parrinello-Rahman coupling. > > 1) Which are the variables actually read from the .edr file for > > restarting, concerning the Parrinello-Rahman barostat? > > 2) Would it be possible to "plug" arbitrary values of these > > variables in a .edr file? This could be needed, for example, if > > you want to exactly restart a run from a previous one, but you > > need to change the barostat variables. If this option is not > > already implemented in the tools suite of gromacs, it would > > require some hack of parts of the code, I guess. Any help would > > be really appreciated. > > Thank you in advance and best regards, > > > > > > > The variables for Parrinello-Rahman in the energy file are the box > velocities. > > Exact restarts are there so that several shorter runs will give binary > identical > results to one long run. Or to exactly redo part of a run. > When you change a barostat variable the concept of exact restarts does > not apply. > > Berk. > > Thanks for your reply. In the previous message, I was misleading, though. What I meant was the following: is it possible to produce an .edr file with "arbitrary" box velocities? For example: I run an NpT simulation (with Parrinello-Rahman barostat), I get an .edr file, and I want to restart from this .edr file, but changing the box velocities with some new values. Of course, this would be not useful for an "exact" restart from a previous run. I'd need something like that for some time-reversibility tests (and not for production runs); so, even a way to "hardcode" the new box velocities into the .edr file or whatever "trick" wouldn't be a big problem. Greetings, Francesco -- ___________________________________________________________ Sign-up for Ads Free at Mail.com http://promo.mail.com/adsfreejump.htm