Hi,<br><br>there is one alternative I forgot to mention.<br><br>Download git with some other tool (e.g. commandline) as before.<br><br>Then use cmake to generate an eclipse project file (don't create a separate build directory but use the source as build directory). And then import that project file into eclipse.<br>
<br>Then you don't need to generate a project in eclipse and you don't need to generate the make targets. Only disadvantage the use of cmake is not yet documented. <br>Also I don't know how to combine cmake with egit. <br>
<br>Roland<br><br><div class="gmail_quote">On Thu, Jan 14, 2010 at 10:42 AM, Roland Schulz <span dir="ltr"><<a href="mailto:roland@utk.edu">roland@utk.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
HI,<br><br>no you don't need Bioclipse. I'm not sure how to use egit yet. It seems that a Eclipse project file has to be on the git server for it to work. Currently there is none.<br><br>@all: Does anyone object for me to add a Eclipse project file to the source? It shouldn't affect anyone not using eclipse.<br>
<br>I use the command line git to download Gromacs and then import it afterwards into Eclipse. Just do this by <br>File->New->C Project->Makefile project->Empty Project->Linux Gcc Toolchain<br>And just select the folder where you downloaded the code from with git.<br>
<br>To compile:<br>First set the compile environment up as usual on the console (e.g. ./bootstrap, ./configure). (I don't think you can do this within eclipse - let me know if you know how to do it)<br>Then create a build target to build what you want (e.g. all or mdrun).<br>
<br>Let me know if you need more detailed steps.<br><br>Roland<br>
<br><br><div class="gmail_quote"><div><div></div><div class="h5">On Thu, Jan 14, 2010 at 10:14 AM, Rodrigo faccioli <span dir="ltr"><<a href="mailto:rodrigo_faccioli@uol.com.br" target="_blank">rodrigo_faccioli@uol.com.br</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div><div></div><div class="h5">
Hi all,<br><br>I've tried to integrate Eclipse IDE and Gromacs source-code because I've worked with Eclipse in my Python and Java programs. Unfortunately, I can't do it works fine. I want to do it because I've studied the Gromacs source-code and now the time to use it in my PhD project came. <br>
<br>My steps to try realized it was:<br><ol><li>Import C++ project where I chose the Git Repository Option. </li><li>I put the link git://<a href="http://git.gromacs.org/gromacs.git" target="_blank">git.gromacs.org/gromacs.git</a> which I obtained from Gromacs website at <a href="http://www.gromacs.org/Developer_Zone/Git/Basic_Git_Usage" target="_blank">http://www.gromacs.org/Developer_Zone/Git/Basic_Git_Usage</a></li>
<li>I check the option: Import project after clone.</li></ol>I get the Gromacs source-code from Git. However, I can't import Gromacs files in my Eclipse project . I tried to run bootstrap command which did not work too.<br>
<br>I searched about it on web and I found the Bioclipse project which tells about Eclipse and Gromacs work together. However, I did not find documentation about it enough. So, my question is: I need to install the Bioclipse or is there other way?<br>
<br>I appreciate any help.<br><br>Thanks in advance.<br><br clear="all">--<br>Rodrigo Antonio Faccioli<br>Ph.D Student in Electrical Engineering<br>University of Sao Paulo - USP<br>Engineering School of Sao Carlos - EESC<br>
Department of Electrical Engineering - SEL<br>Intelligent System in Structure Bioinformatics<br><a href="http://laips.sel.eesc.usp.br" target="_blank">http://laips.sel.eesc.usp.br</a><br>Phone: 55 (16) 3373-9366 Ext 229<br>
Curriculum Lattes - <a href="http://lattes.cnpq.br/1025157978990218" target="_blank">http://lattes.cnpq.br/1025157978990218</a><br>
<br></div></div>--<br>
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