Hi Pedro,<br><br>I've studied Gromacs source-code for the same propose (implementation of Genetic Algorithms).<br>If you can, we can talk more specific about it.<br><br>Thanks,<br><br clear="all">--<br>Rodrigo Antonio Faccioli<br>
Ph.D Student in Electrical Engineering<br>University of Sao Paulo - USP<br>Engineering School of Sao Carlos - EESC<br>Department of Electrical Engineering - SEL<br>Intelligent System in Structure Bioinformatics<br><a href="http://laips.sel.eesc.usp.br">http://laips.sel.eesc.usp.br</a><br>
Phone: 55 (16) 3373-9366 Ext 229<br>Curriculum Lattes - <a href="http://lattes.cnpq.br/1025157978990218">http://lattes.cnpq.br/1025157978990218</a><br>
<br><br><div class="gmail_quote">On Wed, Apr 14, 2010 at 7:57 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div><div></div><div class="h5">On 15/04/2010 8:47 AM, Pedro Dalcin wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hello to all,<br>
<br>
I'm a student at the Federal University of Rio de Janeiro and I'm<br>
working on a project to implement a method, using genetic algorithms, in<br>
Gromacs.<br>
I'm currently studying the code from "minimize.c" (version 4.0.7) and I<br>
was wondering if there is any documentation regarding constants,<br>
variables and functions, at least for this specific file.<br>
Any help in understanding the code would be great.<br>
</blockquote>
<br></div></div>
There is some documentation of some of the relevant data structures on the GROMACS webpage, but it's far from complete. In my experience, the best thing to do can be to get a debugger and step through the code yourself...<br>
<br>
Mark<br><font color="#888888">
-- <br>
gmx-developers mailing list<br>
<a href="mailto:gmx-developers@gromacs.org" target="_blank">gmx-developers@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-developers" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-developers</a><br>
Please don't post (un)subscribe requests to the list. Use the www interface or send it to <a href="mailto:gmx-developers-request@gromacs.org" target="_blank">gmx-developers-request@gromacs.org</a>.<br>
</font></blockquote></div><br>