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Install the commit hook too:<br>
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<div>scp -p -P 29418 <span style="color:#ff0000;"><strong>USER</strong></span>@gerrit.gromacs.org:hooks/commit-msg
.git/hooks/</div>
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On 11/23/11 2:52 PM, Szilárd Páll wrote:
<blockquote
cite="mid:CANnYEw4=7qS1KgzQ72aewjpd+OVzFDMNHTWEsX8zMwuKz99-Pg@mail.gmail.com"
type="cite">
<pre wrap="">Just tried and this works:
git clone <a class="moz-txt-link-freetext" href="ssh://USER@gerrit.gromacs.org:29418/manual.git">ssh://USER@gerrit.gromacs.org:29418/manual.git</a>
--
Szilárd
On Wed, Nov 23, 2011 at 2:41 PM, Alexey Shvetsov
<a class="moz-txt-link-rfc2396E" href="mailto:alexxy@omrb.pnpi.spb.ru"><alexxy@omrb.pnpi.spb.ru></a> wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Szilárd Páll писал 23.11.2011 16:39:
</pre>
<blockquote type="cite">
<pre wrap="">
Looks good to me, could you submit it to gerrit?
</pre>
</blockquote>
<pre wrap="">
Sure. But i didnt find gerrit project for manual
</pre>
<blockquote type="cite">
<pre wrap="">
Thanks!
--
Szilárd
On Wed, Nov 23, 2011 at 12:32 PM, Alexey Shvetsov
<a class="moz-txt-link-rfc2396E" href="mailto:alexxy@omrb.pnpi.spb.ru"><alexxy@omrb.pnpi.spb.ru></a> wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Here is a patch for manual
It should fix all renamed mdp option names
Mark Abraham писал 22.11.2011 17:18:
</pre>
<blockquote type="cite">
<pre wrap="">
On 23/11/2011 1:04 AM, Alexey Shvetsov wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Szilárd Páll писал 22.11.2011 13:58:
</pre>
<blockquote type="cite">
<pre wrap="">
On Tue, Nov 22, 2011 at 10:11 AM, Alexey Shvetsov
<a class="moz-txt-link-rfc2396E" href="mailto:alexxy@omrb.pnpi.spb.ru"><alexxy@omrb.pnpi.spb.ru></a> wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Szilárd Páll писал 21.11.2011 23:45:
</pre>
<blockquote type="cite">
<pre wrap="">
On Mon, Nov 21, 2011 at 9:22 PM, Alexey Shvetsov
<a class="moz-txt-link-rfc2396E" href="mailto:alexxy@omrb.pnpi.spb.ru"><alexxy@omrb.pnpi.spb.ru></a> wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Szilárd Páll писал 21.11.2011 16:24:
</pre>
<blockquote type="cite">
<pre wrap="">
I was about to approve the patch in gerrit, but I realized that
there
is one thing we might have overlooked: mdp option names should be
consistent across standard output, the man pages, and manual.
Questions:
i) Are there more references to mdp options in the code (e.g. help
header text, warning/error
messages)?
</pre>
</blockquote>
<pre wrap="">I'm not sure about manual. If its generated automaticaly then there
should
</pre>
</blockquote>
<pre wrap="">
The man pages are generated from the help messages in the code, the
manual is a separate a latex document (source located here:
<a class="moz-txt-link-abbreviated" href="mailto:git@git.gromacs.org:manual.git">git@git.gromacs.org:manual.git</a>).
</pre>
</blockquote>
<pre wrap="">
Ok. Then man pages should be fine. I'll check manual today.
</pre>
</blockquote>
<pre wrap="">
That would be great! Thanks Alexey!
</pre>
</blockquote>
<pre wrap="">
Seems like this part of manual is generated fro source. :) so it
shouldnt
be problem
</pre>
</blockquote>
<pre wrap="">
There are certainly chunks of the manual not generated from source,
which we should check. If we have a list of names of .mdp options,
grepping should do the trick.
Mark
</pre>
<blockquote type="cite">
<pre wrap="">
</pre>
<blockquote type="cite">
<pre wrap="">-- Szilárd
</pre>
<blockquote type="cite">
<blockquote type="cite">
<pre wrap="">
-- Szilárd
</pre>
<blockquote type="cite">
<pre wrap="">be no problem.
All error messages are fixed in patch. As well as output to md.log.
Seems
all other messages were fixed in patch.
</pre>
<blockquote type="cite">
<pre wrap="">ii) Should we file a separate task in Redmine for fixes in the
manual
and get the patch approves as soon as i) is clarified?
Cheers,
-- Szilárd
On Fri, Oct 21, 2011 at 1:04 AM, Szilárd Páll
<a class="moz-txt-link-rfc2396E" href="mailto:szilard.pall@cbr.su.se"><szilard.pall@cbr.su.se></a>
wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Although in Gromacs hyphen and underscore are interchangeable, I
do
think Alexey's suggestion is good. It improves consistency and
starting the change by generating and documenting only options
with
hyphen only could enable us to maybe brake this
non-differentiation
in
later versions (say 5+ as the option parsing will be reworked)
without
causing too much trouble.
-- Szilárd
On Thu, Oct 20, 2011 at 9:23 PM, Justin A. Lemkul
<a class="moz-txt-link-rfc2396E" href="mailto:jalemkul@vt.edu"><jalemkul@vt.edu></a>
wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Aren't the hyphen and underscore interchangeable, such that
either
is
already accepted?
-Justin
Alexey Shvetsov wrote:
</pre>
<blockquote type="cite">
<pre wrap="">
Hi all!
Seems it will be good idea to have all mdp option names
consistent.
In
its
current state some of them has '-' in its names like E-t while
some
other
options has '_' in their names like init_step. It will be good
if
all
options
will have same naming scheme like only '_' in names or only '-'
in
its
names.
Also it will simplyfy mdp file generation and parsing by
external
software.
I prepared two patches in gerrit
<a class="moz-txt-link-freetext" href="https://gerrit.gromacs.org/229">https://gerrit.gromacs.org/229</a> <- it replaces '_' to '-' in mdp
option
names
<a class="moz-txt-link-freetext" href="https://gerrit.gromacs.org/229">https://gerrit.gromacs.org/229</a> <- it changes mdp.html and
mdp_opt.html
PS currently we use such mdp file parser for gromacs grid ui in
nnn
grid
</pre>
</blockquote>
<pre wrap="">
-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
<a class="moz-txt-link-freetext" href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a>
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</blockquote>
<pre wrap="">
</pre>
</blockquote>
</blockquote>
<pre wrap="">
-- Best Regards,
Alexey 'Alexxy' Shvetsov
Petersburg Nuclear Physics Institute, Russia
Department of Molecular and Radiation Biophysics
Gentoo Team Ru
Gentoo Linux Dev
<a class="moz-txt-link-freetext" href="mailto:alexxyum@gmail.com">mailto:alexxyum@gmail.com</a>
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</blockquote>
</blockquote>
<pre wrap="">
-- Best Regards,
Alexey 'Alexxy' Shvetsov
Petersburg Nuclear Physics Institute, Russia
Department of Molecular and Radiation Biophysics
Gentoo Team Ru
Gentoo Linux Dev
<a class="moz-txt-link-freetext" href="mailto:alexxyum@gmail.com">mailto:alexxyum@gmail.com</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@gentoo.org">mailto:alexxy@gentoo.org</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@omrb.pnpi.spb.ru">mailto:alexxy@omrb.pnpi.spb.ru</a>
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</pre>
</blockquote>
</blockquote>
<pre wrap="">
</pre>
</blockquote>
</blockquote>
<pre wrap="">
--
Best Regards,
Alexey 'Alexxy' Shvetsov
Petersburg Nuclear Physics Institute, Russia
Department of Molecular and Radiation Biophysics
Gentoo Team Ru
Gentoo Linux Dev
<a class="moz-txt-link-freetext" href="mailto:alexxyum@gmail.com">mailto:alexxyum@gmail.com</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@gentoo.org">mailto:alexxy@gentoo.org</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@omrb.pnpi.spb.ru">mailto:alexxy@omrb.pnpi.spb.ru</a>
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</pre>
</blockquote>
</blockquote>
<pre wrap="">
--
Best Regards,
Alexey 'Alexxy' Shvetsov
Petersburg Nuclear Physics Institute, Russia
Department of Molecular and Radiation Biophysics
Gentoo Team Ru
Gentoo Linux Dev
<a class="moz-txt-link-freetext" href="mailto:alexxyum@gmail.com">mailto:alexxyum@gmail.com</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@gentoo.org">mailto:alexxy@gentoo.org</a>
<a class="moz-txt-link-freetext" href="mailto:alexxy@omrb.pnpi.spb.ru">mailto:alexxy@omrb.pnpi.spb.ru</a>
--
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</pre>
</blockquote>
</blockquote>
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