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GMX Developers,
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<div>I am trying to compile the git version on a Blue Gene/P machine. I made it past ccmake with the following command</div>
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<div>ccmake .. \</div>
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<div> -DFFTW_INCLUDE_DIR=/opt/apps/fftw/3.3.2-single/include \</div>
<div> -DFFTW_LIBRARY=/opt/apps/fftw/3.3.2-single/lib/libfftw3f.a \</div>
<div> -DCMAKE_TOOLCHAIN_FILE=../cmake/Toolchain-BlueGeneP.cmake \</div>
<div> -DBUILD_SHARED_LIBS=OFF \</div>
<div> -DGMX_XML=OFF \</div>
<div> -DCMAKE_C_FLAGS="-O3 -qarch=450d -qtune=450" \</div>
<div> -DCMAKE_INSTALL_PREFIX=/opt/apps/gromacs/beta</div>
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<div>It appears that a few flags have changed since the instruction page was made, so I am using the flags that ccmake asked for. Other than that, I believe I am following the instructions on the page.</div>
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<div>The only warnings I received were the following</div>
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<div>"No compatible git version found, won't be able to generate proper development version information.</div>
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<div> Boost >= 1.44 not found. Using minimal internal version. Not recommended if GROMACS is used as library!"</div>
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<div>These both seems like harmless warnings, but perhaps I am underestimating their importance.</div>
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<div>When I issue "make mdrun" it stops with the following output.</div>
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<div> Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 327.13: 1540-0300 (S) The "private" member "gmx::AnalysisDataStorageFrame::AnalysisDataStorageFrame(AnalysisDataStorage *, int, int)" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 352.20: 1540-0300 (S) The "private" member "gmx::AnalysisDataStorageFrame::header_" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 353.20: 1540-0300 (S) The "private" member "gmx::AnalysisDataStorageFrame::clearValues()" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 361.10: 1540-0301 (S) The "protected" member "gmx::AbstractAnalysisData::notifyPointsAdd(const AnalysisDataPointSetRef &) const" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 390.18: 1540-0301 (S) The "protected" member "gmx::AbstractAnalysisData::notifyFrameStart(const AnalysisDataFrameHeader &) const" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 391.18: 1540-0301 (S) The "protected" member "gmx::AbstractAnalysisData::notifyPointsAdd(const AnalysisDataPointSetRef &) const" cannot be accessed.</div>
<div>"/home/paul/gromacs.git.092012/src/gromacs/analysisdata/datastorage.cpp", line 392.18: 1540-0301 (S) The "protected" member "gmx::AbstractAnalysisData::notifyFrameFinish(const AnalysisDataFrameHeader &)" cannot be accessed.</div>
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<div>make[3]: *** [src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o] Error 1</div>
<div>make[2]: *** [src/gromacs/CMakeFiles/libgromacs.dir/all] Error 2</div>
<div>make[1]: *** [src/programs/mdrun/CMakeFiles/mdrun.dir/rule] Error 2</div>
<div>make: *** [mdrun] Error 2</div>
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<div>I'm not sure if this is a bug, or if I am still missing a flag. Advice would be greatly appreciated. </div>
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<div>If there is any additional information that I can provide, please let me know.</div>
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-------------------------------------------------------</div>
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Paul Whitford, Assistant Professor</div>
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Department of Physics</div>
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Dana Research Center, Room 123</div>
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Northeastern University</div>
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Boston, MA 02115</div>
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Office: 617-373-2952</div>
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Email: <a href="mailto:p.whitford@neu.edu">p.whitford@neu.edu</a></div>
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