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<div class="moz-cite-prefix">Hi Carsten,<br>
<br>
After how many steps does this happen?<br>
<br>
Could you run with a debug build (or without NDEBUG defined)?<br>
I added a lot of checks, not done with NDEBUG, in the fix for the
issue you linked.<br>
<br>
Cheers,<br>
<br>
Berk<br>
<br>
On 11/07/2013 06:27 PM, Mark Abraham wrote:<br>
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<div dir="ltr">Unclear. 6583c94 is one of your commits. Some very
recent stuff has been playing with nstlist and rlist (safely, or
so we thought.) Can you reproduce with mainstream release-4-6?
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<div>Mark</div>
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<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Thu, Nov 7, 2013 at 5:18 PM, Carsten
Kutzner <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:ckutzne@gwdg.de" target="_blank">ckutzne@gwdg.de</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
we have a 120k atom system that crashes with<br>
<br>
------------------------------------------------------<br>
Program mdrun_mpi, VERSION 4.6.4-dev-20131015-6583c94<br>
Source code file: /home/c/gromacs/src/mdlib/nbnxn_search.c,
line: 685<br>
<br>
Software inconsistency error:<br>
Lost particles while sorting<br>
For more information and tips for troubleshooting, please
check the GROMACS<br>
website at <a moz-do-not-send="true"
href="http://www.gromacs.org/Documentation/Errors"
target="_blank">http://www.gromacs.org/Documentation/Errors</a><br>
-------------------------------------------------------<br>
<br>
if run with >= 2 MPI processes on a GPU and small values
for nstlist. On my workstation,<br>
nstlist = 34 and larger works, whereas nstlist <= 33 lead
to the above problem.<br>
<br>
Another system (60k atoms) does not produce this problem, so
system size seems<br>
to matter as well.<br>
<br>
Looks like an old ghost:<br>
<br>
<a moz-do-not-send="true"
href="http://redmine.gromacs.org/issues/1153"
target="_blank">http://redmine.gromacs.org/issues/1153</a><br>
<br>
<br>
Should I file a redmine issue?<span class="HOEnZb"><font
color="#888888"><br>
<br>
Carsten<br>
<br>
<br>
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