<div dir="ltr">No, but I can grep for tMPI_Thread_cond_wait and work backwards to see that this happens in communicator splitting. I would step through gmx_setup_nodecomm and perhaps gmx_setup.<div><br></div><div>Mark</div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Nov 19, 2013 at 2:25 AM, Szilárd Páll <span dir="ltr"><<a href="mailto:pall.szilard@gmail.com" target="_blank">pall.szilard@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
The nightly builds on the Mac build slave have been suffering from an<br>
issue which manifests in mdrun hanging during "make check" in one of<br>
the pdb2gmx tests, see:<br>
<a href="http://jenkins.gromacs.org/job/Coverage_Gerrit_4_6/297/" target="_blank">http://jenkins.gromacs.org/job/Coverage_Gerrit_4_6/297/</a><br>
<a href="http://jenkins.gromacs.org/job/Coverage_Gerrit_4_6/299/" target="_blank">http://jenkins.gromacs.org/job/Coverage_Gerrit_4_6/299/</a><br>
<br>
Looking at the working directory I could not decipher in which tests<br>
did it get stuck with and I've no idea why and attaching a debugger to<br>
mdrun did not help much either:<br>
Attaching to process 43196.<br>
Reading symbols for shared libraries . done<br>
Reading symbols for shared libraries<br>
......................................... done<br>
Reading symbols for shared libraries + done<br>
0x00007fff903e2bca in __psynch_cvwait ()<br>
(gdb) bt<br>
#0 0x00007fff903e2bca in __psynch_cvwait ()<br>
#1 0x00007fff92e7c274 in _pthread_cond_wait ()<br>
#2 0x000000010341d195 in tMPI_Thread_cond_wait ()<br>
Previous frame inner to this frame (gdb could not unwind past this frame)<br>
<br>
Does anybody have an idea what's going on?<br>
<br>
Cheers,<br>
--<br>
Szilárd<br>
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