<div dir="ltr">Simplify - get non-MPI non-CUDA working first. Then you can perhaps find the source of the problem. Check your VT works on another application.<div><br></div><div>Mark</div></div><div class="gmail_extra"><br>
<br><div class="gmail_quote">On Mon, Aug 4, 2014 at 1:28 AM, Theodore Si <span dir="ltr"><<a href="mailto:sjyzhxw@gmail.com" target="_blank">sjyzhxw@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi,<br>
<br>
Does anyone know how to do this?<br>
I tried to compile GROMACS with <br>
<br>
<span style="font-family:Calibri" lang="zh-CN">cmake ..
-DCMAKE_BUILD_OWN_FFTW=ON
-DCMAKE_C_COMPILER=vtcc -DCMAKE_CXX_COMPILER=vtcxx</span><span style="font-family:Calibri" lang="en-US"> </span><span style="font-family:Calibri" lang="zh-CN"><span> </span>-DGMX_MPI=on
-DCMAKE_INSTALL_PREFIX=~/</span><span style="font-family:Calibri" lang="en-US">my</span><span style="font-family:SimSun" lang="en-US">prg/</span><span style="font-family:Calibri" lang="zh-CN">gmx</span><span style="font-family:Calibri" lang="en-US"> </span><span style="font-family:Calibri" lang="zh-CN">-</span><span style="font-family:Calibri" lang="en-US">DCU</span><span style="font-family:Calibri" lang="zh-CN">DA_TOOLKIT_ROOT_DIR=/usr/local/cuda-5.5</span><span style="font-family:Calibri" lang="en-US"> -DC</span><span style="font-family:Calibri" lang="zh-CN">MAKE_INCLUDE_PATH</span><span style="font-family:Calibri" lang="en-US">=</span><span style="font-family:Calibri" lang="zh-CN">~/myprg/vt/include/vampirtrace<br>
<br>
After compilation, when I execute mdrun with a tpr file, I get a
segmentation fault, and no Vampir trace result files are
generated.<br>
<br>
What should I do?<br>
</span>
</div>
<br>--<br>
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