<div dir="ltr"><br><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 7, 2014 at 5:22 PM, Szilárd Páll <span dir="ltr"><<a href="mailto:pall.szilard@gmail.com" target="_blank">pall.szilard@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Are we not running valgrind in Jenkins? If that's the case this is<br>
unexpected and likely a bug, right?<br></blockquote><div>We only run valgrind on the unit tests. Not the regressiontests.</div><div><br></div><div>Roland</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
--<br>
Szilárd<br>
<div class="HOEnZb"><div class="h5"><br>
<br>
On Fri, Oct 3, 2014 at 4:49 PM, Viveca Lindahl <<a href="mailto:vivecal@kth.se">vivecal@kth.se</a>> wrote:<br>
> I happened to run 'valgrind grompp' on with release-5-0 (a349e4) and get 1<br>
> error:<br>
><br>
> ==31504== 1 errors in context 1 of 1:<br>
> ==31504== Syscall param write(buf) points to uninitialised byte(s)<br>
> ==31504== at 0x5D783B0: __write_nocancel (syscall-template.S:81)<br>
> ==31504== by 0x5D05A82: _IO_file_write@@GLIBC_2.2.5 (fileops.c:1261)<br>
> ==31504== by 0x5D06F5B: _IO_do_write@@GLIBC_2.2.5 (fileops.c:538)<br>
> ==31504== by 0x5D0530F: _IO_file_sync@@GLIBC_2.2.5 (fileops.c:892)<br>
> ==31504== by 0x5CFA9D1: fflush (iofflush.c:41)<br>
> ==31504== by 0x5D26AE: gmx_fio_close (in<br>
> /data/viveca/programs/awh/bin/gmx_5)<br>
> ==31504== by 0x4DFE81: gmx_grompp (in<br>
> /data/viveca/programs/awh/bin/gmx_5)<br>
> ==31504== by 0x5321DD: gmx::CommandLineModuleManager::run(int, char**)<br>
> (in /data/viveca/programs/awh/bin/gmx_5)<br>
> ==31504== by 0x48C434: main (in /data/viveca/programs/awh/bin/gmx_5)<br>
> ==31504== Address 0x404d050 is not stack'd, malloc'd or (recently) free'd<br>
> ==31504== Uninitialised value was created by a stack allocation<br>
> ==31504== at 0x4DACFB: gmx_grompp (in<br>
> /data/viveca/programs/awh/bin/gmx_5)<br>
><br>
> ... comments?<br>
><br>
><br>
> Viveca<br>
><br>
</div></div><span class="HOEnZb"><font color="#888888">> --<br>
> Gromacs Developers mailing list<br>
><br>
> * Please search the archive at<br>
> <a href="http://www.gromacs.org/Support/Mailing_Lists/GMX-developers_List" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/GMX-developers_List</a> before<br>
> posting!<br>
><br>
> * Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
><br>
> * For (un)subscribe requests visit<br>
> <a href="https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-developers" target="_blank">https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-developers</a> or<br>
> send a mail to <a href="mailto:gmx-developers-request@gromacs.org">gmx-developers-request@gromacs.org</a>.<br>
--<br>
Gromacs Developers mailing list<br>
<br>
* Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/GMX-developers_List" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/GMX-developers_List</a> before posting!<br>
<br>
* Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
<br>
* For (un)subscribe requests visit<br>
<a href="https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-developers" target="_blank">https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-developers</a> or send a mail to <a href="mailto:gmx-developers-request@gromacs.org">gmx-developers-request@gromacs.org</a>.</font></span></blockquote></div><br><br clear="all"><div><br></div>-- <br>ORNL/UT Center for Molecular Biophysics <a href="http://cmb.ornl.gov">cmb.ornl.gov</a><br>865-241-1537, ORNL PO BOX 2008 MS6309
</div></div>