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<div class="">Dear all,</div>
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I’ve had a patch for review for a couple of weeks, being one +1 from being accepted. It concerns a periodicity issue with gmx hbond that causes problems for non-periodic systems. May I ask you to consider reviewing <a href="https://gerrit.gromacs.org/#/c/4350/" class="">https://gerrit.gromacs.org/#/c/4350/</a> so
that it can make it for 5.1? Although most simulations use periodic boxes there is a growing number of gas-phase studies and it would be a shame to keep users waiting for a fully functioning analysis tool when there is a committed bug fix.
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<div class="">Kind regards,</div>
<div class="">Erik</div>
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<div class="">Erik Marklund, PhD</div>
<div class="">Postdoctoral Research Fellow, Fulford JRF</div>
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<div class="">Department of Chemistry</div>
<div class="">Physical & Theoretical Chemistry Laboratory</div>
<div class="">University of Oxford</div>
<div class="">South Parks Road</div>
<div class="">Oxford</div>
<div class="">OX1 3QZ</div>
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<blockquote type="cite" class="">
<div class="">On 10 Feb 2015, at 15:30, Magnus Lundborg <<a href="mailto:magnus.lundborg@scilifelab.se" class="">magnus.lundborg@scilifelab.se</a>> wrote:</div>
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<div class="moz-cite-prefix">Hi,<br class="">
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Sounds good. It would be nice to get my latest TNG version patch in there, but it's on master, so perhaps it's already planned.<br class="">
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Cheers,<br class="">
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Magnus<br class="">
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On 02/10/2015 04:00 PM, Mark Abraham wrote:<br class="">
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<blockquote cite="mid:CAMNuMAQ7u5Tvq7-atALFcS9YzMwGsOVRr7_MSwE438vKJeSa1g@mail.gmail.com" type="cite" class="">
<div dir="ltr" class="">Hi,
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<div class="">Sorry for quietness on the management front, I've had a bunch of non-code tasks lately. We're a few weeks behind on my original timeline for 5.1-beta1. Various people had expressed hopes of putting code on gerrit, but few things have actually
appeared, so I think we should pretty much regard the feature stuff on gerrit now as the maximum extent of 5.1. There's still a bunch of dead / experimental patches on gerrit that won't make the 5.1 cut, of course. Please speak up super-fast if that's a problem
- you should have had code in gerrit a month and more ago!</div>
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<div class="">So I plan to roll 5.1-beta1 from master HEAD on Friday, and branch release-5-1 and Jenkins infrastructure at that time. Per my original suggestion, release-5-1 will be open for "feature"-type content for a few weeks while we deal with remaining
code review of things currently on master. Once we release 5.1-rc1 (perhaps after another beta if appropriate) then features are frozen. The gerrit cherry-pick feature should be good for people to make clear that they are proposing a "feature" patch for release-5-1.</div>
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<div class="">I'd like to see a couple more of the new Sphinx-based docs commits at
<a moz-do-not-send="true" href="https://gerrit.gromacs.org/#/q/status:open+project:gromacs+branch:master+topic:docs" class="">
https://gerrit.gromacs.org/#/q/status:open+project:gromacs+branch:master+topic:docs</a> get merged, so that we can invite users to give feedback or contribute docs.</div>
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<div class="">It would be great for our colleagues at StreamComputing if we get their OpenCL work out to the world in the first beta; I know Berk has given some feedback but is basically OK with the commit. Szilard has a few outstanding questions we can probably
resolve quickly. I have a reservation about whether using more than one Nvidia GPU works, but since that is in any case not a useful configuration for performance, we can hack a temporary fatal error in front of that and ship something usable.</div>
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<div class="">Szilard's CUDA work needs to get in, but the remaining issues there are minor, I think.</div>
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<div class="">Berk's halo-decomposition is not yet clearly useful (right, Berk?) so perhaps we will leave that on the shelf for now.</div>
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<div class="">Erik's SIMD support patches need one more reviewer. It would be nice to be able to say to hardware devs that we already have preliminary support in released code when early-phase testing is on the cards.</div>
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<div class="">Happy hacking!</div>
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<div class="">Mark</div>
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