<div dir="ltr">Hi,<div><br></div><div>Additionally, GROMACS uses an embarrassing amount of the preprocessor, and tooling that does not implement a full parser does not cope with that. There's less of that in more recent code (but more if you look at the nonbonded kernels, as you likely should not ;-))</div><div><br></div><div>Mark<br><br></div></div><br><div class="gmail_quote"><div dir="ltr">On Fri, Jul 3, 2015 at 3:22 AM Jernej Zidar <<a href="mailto:jernej.zidar@gmail.com">jernej.zidar@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Any particular reason for trying to work on a very obsolete version?<br>
<br>
Gromacs 4.5.7 is *very* old and outdated. You'll probably have less<br>
problems with more recent one (anything from the 5.x branch will do).<br>
<br>
Cheers from one-north!<br>
<br>
Jernej<br>
<br>
On Thu, Jul 2, 2015 at 4:54 PM, Amr ALHOSSARY <<a href="mailto:amr_alhossary@hotmail.com" target="_blank">amr_alhossary@hotmail.com</a>> wrote:<br>
> Hi,<br>
><br>
> I am trying to import gromacs 4.5.7 into Eclipse Luna with latest CDT,<br>
> following the steps proposed by Roland five years ago<br>
> (<a href="https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-developers/2010-Janu" rel="noreferrer" target="_blank">https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-developers/2010-Janu</a><br>
> ary/003921.html ).<br>
><br>
> Egit works well to import the files.<br>
> Then I call cmake in the project root, making the build directory in the<br>
> same src directory, using this command line:<br>
><br>
> cmake -G"Eclipse CDT4 - Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug<br>
> -DGMX_BUILD_OWN_FFTW=ON --build src/ ./<br>
><br>
> and import the project using the “existing code as Makefile project” wizard.<br>
> The import works well. It compiles, runs, and debugs. However, it seems that<br>
> the indexer can not parse the files well.<br>
> Although the includes are available and navigable, The indexer cannot parse<br>
> a lot of type definitions and macros For example: in md.c, gmx_large_int_t<br>
> couldn’t be resolved, although I can navigate to “typedefs.h” and from it to<br>
> “types/simple.h”. Similar situation for the macro “MASTER(cr)”.<br>
><br>
> Please advise how can I fix this out.<br>
><br>
> Thanks for help<br>
><br>
> Amr<br>
><br>
><br>
><br>
><br>
><br>
> Best Regards,<br>
> Amr AL-HOSSARY<br>
><br>
><br>
> Amr Ali AL-HOSSARY | Ph.D. Candidate | International PhD program in<br>
> Computational Biology and Bioinformatics | School of Computer<br>
> Engineering | Nanyang Technological University | Singapore (GMT+8)<br>
> | Email: <a href="mailto:aalhossary@pmail.ntu.edu.sg" target="_blank">aalhossary@pmail.ntu.edu.sg</a> | Mobile: +65-94572816<br>
><br>
><br>
><br>
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