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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Your patch doesn’t compile. That’s why we usually don’t accept changes other than through Gerrit.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Make sure to sign up for an account on Gerrit first. Then use either the http or ssh connection shown on:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><a href="https://gerrit.gromacs.org/#/admin/projects/gromacs">https://gerrit.gromacs.org/#/admin/projects/gromacs</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Note the “anonymous http” connection doesn’t work for upload. Make sure that the http/ssh connection is allowed through your firewall. Both are guaranteed to
work on our side.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Roland<o:p></o:p></span></p>
<p class="MsoNormal"><a name="_MailEndCompose"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></a></p>
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<p class="MsoNormal"><a name="_____replyseparator"></a><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Boris Timofeev [mailto:boristim@mail.ru]
<br>
<b>Sent:</b> Thursday, January 5, 2017 1:59 AM<br>
<b>To:</b> Schulz, Roland <roland.schulz@intel.com><br>
<b>Subject:</b> Re[2]: [gmx-developers] gmx I/O redirection troubles<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Unfortunately, there are some difficulties with <o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Gerrit.gromacs.org </span>connection. Therefore a patch in attachment.<br>
Thanks.<o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">Вторник, 3 января 2017, 0:33 +03:00 от "Schulz, Roland" <<a href="mailto:roland.schulz@intel.com">roland.schulz@intel.com</a>>:<o:p></o:p></p>
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<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Hi,</span><o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Please upload a patch to Gerrit.gromacs.org.</span><o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Roland</span><o:p></o:p></p>
<p><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">
<a href="mailto:gromacs.org_gmx-developers-bounces@maillist.sys.kth.se">gromacs.org_gmx-developers-bounces@maillist.sys.kth.se</a> [<a href="mailto:gromacs.org_gmx-developers-bounces@maillist.sys.kth.se">mailto:gromacs.org_gmx-developers-bounces@maillist.sys.kth.se</a>]
<b>On Behalf Of </b>Boris Timofeev<br>
<b>Sent:</b> Monday, January 2, 2017 10:26 AM<br>
<b>To:</b> <a href="mailto:gromacs.org_gmx-developers@maillist.sys.kth.se">gromacs.org_gmx-developers@maillist.sys.kth.se</a><br>
<b>Subject:</b> [gmx-developers] gmx I/O redirection troubles</span><o:p></o:p></p>
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<p> <o:p></o:p></p>
<p>Now I finish development of Win64 GUI for a call of the Gromacs commands. <br>
It uses well structured help of Gromacs utilities for dynamic creation of modeless dialog boxes
<br>
for a choice of parameters of a commands and then commands execution. <br>
It is implemented by non-blocked I/O redirection of gmx I/O through named pipes.<o:p></o:p></p>
<p>The main problem which I taked - The commands in interactive mode of user interaction hungs up,
<br>
so without showing anything in the pipes. After some time of dances with tambourines (debugging),<br>
I understood that faults caused by buffering of stdout/stderr, <br>
the problem was solved by adding of fflush (stdout/stderr) before an interactive call of fgets (., stdin).<br>
In this regard I have any questions to developpers: <br>
- whether it makes a sense to add correction to a repository or it is better to make it to authors of a code?<br>
- why such disorder with use of stdout and stderr in sources?<br>
List of files witsh adding fflush:<o:p></o:p></p>
<p>gmx_eneconv.cpp<br>
gmx_energy.cpp<br>
gmx_make_ndx.cpp<br>
gmx_trjcat.cpp<br>
pdb2gmx.cpp<br>
pdb2top.cpp<br>
specbond.cpp<br>
ter_db.cpp<br>
index.cpp<o:p></o:p></p>
<p>And may be anything else?<o:p></o:p></p>
<p><br>
<br>
<br>
-- <br>
Boris Timofeev<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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