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<p>try:</p>
<p> <span class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">mpirun -np 20
gmx_mpi -ntomp 1 -ntmpi 20 mdrun <lots of args></span></p>
<br>
<div class="moz-cite-prefix">On 28/06/18 16:25, Steve Walk wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAK6_0Gc=UPxc41n9MtxSoE2J00TS3zXPLzH53Yz6CaYkod42mw@mail.gmail.com">
<div dir="ltr"><br>
<div>Hello,</div>
<div><br>
</div>
<div>I'm trying to run this version of gromacs on</div>
<div>recently announced hardware and I'm getting</div>
<div>a run-time error. I was hoping someone could</div>
<div>point to where the error code is defined.</div>
<div><br>
</div>
<div>I suspect that it's not recognizing the topology</div>
<div>correctly (it's kind of a big machine).</div>
<div><br>
</div>
<div>Any hints would be appreciated.</div>
<div><br>
</div>
<div>Steve Walk</div>
<div>Cavium</div>
<div><br>
</div>
<div>
<span></span>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:15px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">OMP_NUM_THREADS=1
mpirun -np 20 gmx_mpi mdrun <lots of args></span></p>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:15px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures"><br>
</span></p>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:15px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">Adding
the -print-exit-codes option shows</span></p>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:15px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures"><br>
</span></p>
</div>
<div>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">===================================================================================</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">= <span
class="gmail-Apple-converted-space"> </span>BAD
TERMINATION OF ONE OF YOUR APPLICATION PROCESSES</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">= <span
class="gmail-Apple-converted-space"> </span>EXIT CODE:
6</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">= <span
class="gmail-Apple-converted-space"> </span>CLEANING
UP REMAINING PROCESSES</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">= <span
class="gmail-Apple-converted-space"> </span>YOU CAN
IGNORE THE BELOW CLEANUP MESSAGES</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">===================================================================================</span></p>
<p class="gmail-p2"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(255,255,255)"><span
class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">[<a class="moz-txt-link-abbreviated" href="mailto:mpiexec@localhost.localdomain">mpiexec@localhost.localdomain</a>]
Exit codes: [localhost.localdomain]
6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0</span></p>
<br>
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