[ defaults ] ;Lennard-Jones Combination Rule generate pairs 1 1 no [ atomtypes ] ;name mass charge ptype C6 c12 ; TIP4P-Atome Parameter aus Jorgensen, J. Chem. Phys., 79(2), 1983, p 926ff OW 15.99940 0.0 A 0.25543E-02 0.25145E-05 HW 1.00800 0.0 A 0.00000E+00 0.00000E+00 MW 0.0 0.0 A 0.00000E+00 0.00000E+00 ; OPLS CH4 16.04300 0.0 A 1.32600E-02 3.57105E-05 CH4D 16.04300 0.0 A 0.00000E+00 0.00000E+00 [ nonbond_params ] ; TIP4P-Wasser OW OW 1 0.25543E-02 0.25145E-05 OW HW 1 0.00000E+00 0.00000E+00 OW MW 1 0.00000E+00 0.00000E+00 HW OW 1 0.00000E+00 0.00000E+00 HW HW 1 0.00000E+00 0.00000E+00 HW MW 1 0.00000E+00 0.00000E+00 MW OW 1 0.00000E+00 0.00000E+00 MW HW 1 0.00000E+00 0.00000E+00 MW MW 1 0.00000E+00 0.00000E+00 ; OPLS Methan -> Parameter aus Jorgensen, Madura, Swenson, J. Am. Chem. Soc., 1984, 106, 6638-6646 -> sigma = 3.730 Angtroem, E = 0.294 kcal/mol ; 0.373 nm, 1.2309192 kJ/mol CH4 CH4 1 1.32600E-02 3.57105E-05 CH4D CH4D 1 0.00000E+00 0.00000E+00 ; Parameter für das Dummy-Methan ; ;Mix CH4 OW 1 5.81831E-03 9.47597E-06 CH4 HW 1 0.00000E+00 0.00000E+00 CH4 MW 1 0.00000E+00 0.00000E+00 OW CH4 1 5.81831E-03 9.47597E-06 HW CH4 1 0.00000E+00 0.00000E+00 MW CH4 1 0.00000E+00 0.00000E+00 CH4D OW 1 0.00000E+00 0.00000E+00 CH4D HW 1 0.00000E+00 0.00000E+00 CH4D MW 1 0.00000E+00 0.00000E+00 OW CH4D 1 0.00000E+00 0.00000E+00 HW CH4D 1 0.00000E+00 0.00000E+00 MW CH4D 1 0.00000E+00 0.00000E+00 [ moleculetype ]; TIP4P ; molname nrexcl SOL 1 [ atoms ] ; id at type res nr residu name at name cg nr charge mass typeB chargeB massB 1 OW 1 SOL O 1 0 15.99940 2 HW 1 SOL H1 1 0.52 1.00800 3 HW 1 SOL H2 1 0.52 1.00800 4 MW 1 SOL M 1 -1.04 0.0 [ settles ] ; i funct doh dhh 1 1 0.09572 0.15139 ; The position of the dummy is computed as follows: ; ; O ; ; D ; ; H H ; ; const = distance (OD) / [ cos (angle(DOH)) * distance (OH) ] ; 0.015 nm / [ cos (52.26 deg) * 0.09572 nm ] ; Dummy pos x4 = x1 + a*(x2-x1) + b*(x3-x1) [ dummies3 ] ; Dummy from funct a b 4 1 2 3 1 0.128012065 0.128012065 [ exclusions ] 1 2 3 4 2 1 3 4 3 1 2 4 4 1 2 3 [ moleculetype ]; OPLS - Methan ; molname nrexcl Methan 1 [ atoms ] ; nr type resnr residue atom cgnr charge mass typeB chargeB massB 1 CH4 1 METH C 1 0.0 16.04300 CH4D 0.0 16.04300 [ system ] Methan (OPLS) in Wasser (TIP4P), T 300 °K, 1 bar, 200 ps, NVT-Free Energy Sampling [ molecules ] SOL 216 Methan 1