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> First you don't want ld.so.conf in your path; it is just a list of
<br>> directories to search for libraries when linking. When you change
the
<br>> file you should run /sbin/ldconfig, but that's it.
<br>> Second, if you're running linux on an Alpha CPU, you most definitely
do
<br>> not want the x86 assembly loops. I would recommend
<p>> make distclean
<br>> ./configure --prefix=/home/gmx/home3.0 --without-motif-libraries
<br>> make
<br>> make install
<br>>
<br>> When that works, recompile the mdrun binary with mpi support (if
you
<br>> have multiple cpus on the machine, or multiple macines)
<br>>
<br>> make distclean
<br>> ./configure --prefix=/home/gmx/home3.0 --without-motif-libraries
\
<br>> --enable-mpi
<br>> make mdrun
<br>> make install
<br>>
<br>Yes , this process works. Many thanks!
<br>PS: the linux system on alpha cluster is redhat 2.2.13-2, I am
not sure
<br>whether it is related to the previous problem. Maybe 2.4.* is the better
<br>kernel for gmx3.0 or gmx3.1?
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Best regards
Yours sincerely
Hao Fan :-)
-------------------------------------------------------------------------
Drs. Hao Fan email F.Hao@chem.rug.nl
Lab. of Biophysical Chemistry
University of Groningen
Nijenborgh 4 9747 AG GRONINGEN
The Netherlands
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