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Eva,<br><br>
<blockquote type=cite class=cite cite>WARNING 1 [file
"C:/gromacs/share/top/ffgmx.itp", line 6]:<br>
Found another defaults entry, will use the last
one</blockquote><br>
This means that it found more than one entry in the force field files for
the same thing. When it encounters two lines defining the same
thing, whether it is atom types, bonds, dihedrals etc, then the program
uses the last one defined.<br><br>
<blockquote type=cite class=cite cite>Warning: atom names in pro_lip.top
and pro_lip.gro don't match (CN1 - CA)<br>
Warning: atom names in pro_lip.top and pro_lip.gro don't match (CN2 -
CB)</blockquote><br>
This error came up a week or two ago on the list, I think. May be
check the archive. I think it has to do with the order in which the
included topologies are in the topology file. I encountered
something very similar to this (can't recall the error exactly), but
simply changing the order of the molecules in the list at the end of the
topology file fixed it.<br><br>
Hope that is of some assistance.<br><br>
Catch ya,<br>
<x-sigsep><p></x-sigsep>
<b>Dr. Dallas Warren<br>
</b><i>Research Fellow<br>
</i>Department of Pharmaceutical Biology and Pharmacology<br>
Victorian College of Pharmacy<br>
Monash University<br>
381 Royal Parade<br>
Parkville VIC 3010<br>
<font color="#0000FF"><u>dallas.warren@vcp.monash.edu.au<br>
</u></font>+61 3 9903 9076</html>