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David,<br><br>
<blockquote type=cite class=cite cite>based on atomtype.<br>
Check the type your atoms have in the [ atoms ]
section</blockquote><br>
Actually, that isn't quite what I am asking.<br><br>
In the bon.itp file for the force field, there are two constants defined
for i and l These are some how put together to form an improper
dihedral for i, j, k, l. In the case of an amide bond (with ffgmx),
you have atom types CH2, C, OM and N. Therefore, which improper
dihedrals have to be defined in ffgmxbon.itp to form the final
description of it? CH2 - N, CH2 - OM and N - OM?<br><br>
Catch ya,<br>
<x-sigsep><p></x-sigsep>
<b>Dr. Dallas Warren<br>
</b><i>Research Fellow<br>
</i>Department of Pharmaceutical Biology and Pharmacology<br>
Victorian College of Pharmacy<br>
Monash University<br>
381 Royal Parade<br>
Parkville VIC 3010<br>
<font color="#0000FF"><u>dallas.warren@vcp.monash.edu.au<br>
</u></font>+61 3 9903 9076</html>