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<blockquote TYPE=CITE>Hi all,</blockquote>
Some weeks ago I reported to the list some compilation problems:
<br>______________________________________________________-
<br>
<blockquote TYPE=CITE>On Fri, 2003-02-28 at 03:23, Ruben Martinez Buey
wrote:
<br>> Hi all,
<br>> I´m trying to compile gromacs 3.1.4 on a Silicon Origin 3800.
<br>> First, I set the next enviroment flags:
<br>>
<br>> setenv CPPFLAGS "-I/cicyt/e4149/fftw/include"
<br>> setenv LDFLAGS "-L/cicyt/e4149/fftw/lib"
<br>> setenv LIBS "-lmpi"
<br>> setenv INSTALL /r1/cicyt/e4149/gromacs-3.1.4/config/install-sh
<br>>
<br>> and then the options for configure:
<br>> ./configure --prefix=/home/gromacs --enable-mpi
<br>>
<br>> make
<br>>
<br>> and when finally make install:
<br>>
<br>> /r1/cicyt/e4149/gromacs-3.1.4/config/install-sh -m 644 nrama.h
<br>> /r1/cicyt/e4149/gromacs/include/nrama.h
<br>> /r1/cicyt/e4149/gromacs-3.1.4/config/install-sh -m 644 rmpbc.h
<br>> /r1/cicyt/e4149/gromacs/include/rmpbc.h
<br>> /r1/cicyt/e4149/gromacs-3.1.4/config/install-sh -m 644 ./tgroup.h
<br>> /r1/cicyt/e4149/gromacs/include/tgroup.h
<br>> install: ./tgroup.h does not exist
<br>> *** Error code 1 (bu21)
<br>> *** Error code 1 (bu21)
<br>> *** Error code 1 (bu21)
<br>> *** Error code 1 (bu21)</blockquote>
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<blockquote TYPE=CITE>I resolved this problem by simply:</blockquote>
<p><br>./configure --prefix=/home/gromacs-3.1.4 --enable-mpi
<br>instead of ./configure --prefix=/home/gromacs --enable-mpi, where /home/gromacs-3.1.4
is the resulting directory when I unzip the source code.
<p>All is right, but whn I try to compile in double precision:
<p>./configure --prefix=/home/gromacs-3.1.4 --disable-float --enable-mpi
<br>make
<p>cc -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON
-LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff
1174 -D__INLINE_INTRINSICS -woff 84 -o highway highway.o xutil.o xmb.o
x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o
nmol.o nleg.o dialogs.o logo.o filter.o molps.o -L/r1/cicyt/e4149/fftw/lib
../mdlib/.libs/libmd_mpi_d.a -L/usr/lib64/mips4/r10000 -L/usr/lib64/mips4
-L/usr/lib64 ../gmxlib/.libs/libgmx_mpi_d.a /r1/cicyt/e4149/fftw/lib/libdrfftw_mpi.a
/r1/cicyt/e4149/fftw/lib/libdfftw_mpi.a /r1/cicyt/e4149/fftw/lib/libdrfftw.a
/r1/cicyt/e4149/fftw/lib/libdfftw.a -lXm -lXt -lSM -lICE -lXext -lX11 -lmpi
-lftn -lm
<br>Making all in contrib
<br> cd .. \
<br> && CONFIG_FILES=
CONFIG_HEADERS=src/config.h \
<br>
/bin/sh ./config.status
<br>config.status: creating src/config.h
<br>config.status: src/config.h is unchanged
<br>Making all in admin
<br>Making all in scripts
<br> cat ./GMXRC.in | sed 's,@bindir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/bin,'
> GMXRC
<br> cat ./GMXRC.csh.in | sed
's,@libdir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/lib,' | \
<br> sed 's,@bindir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/bin,'
| \
<br> sed 's,@datadir\@,/r1/cicyt/e4149/gromacs-3.1.4/share,'
| \
<br> sed 's,@mandir\@,/r1/cicyt/e4149/gromacs-3.1.4/man,'
> GMXRC.csh
<br> cat ./GMXRC.bash.in | sed
's,@libdir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/lib,' | \
<br> sed 's,@bindir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/bin,'
| \
<br> sed 's,@datadir\@,/r1/cicyt/e4149/gromacs-3.1.4/share,'
| \
<br> sed 's,@mandir\@,/r1/cicyt/e4149/gromacs-3.1.4/man,'
> GMXRC.bash
<br> cat ./GMXRC.zsh.in | sed
's,@libdir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/lib,' | \
<br> sed 's,@bindir\@,/r1/cicyt/e4149/gromacs-3.1.4/mips-sgi-irix6.5/bin,'
| \
<br> sed 's,@datadir\@,/r1/cicyt/e4149/gromacs-3.1.4/share,'
| \
<br> sed 's,@mandir\@,/r1/cicyt/e4149/gromacs-3.1.4/man,'
> GMXRC.zsh
<br>don't know how to make completion.csh (bu42).
<br>*** Error code 1 (bu21)
<p>Thanks a lot,
<br>Groetens,
<br>Ruben
<blockquote TYPE=CITE>
<br> </blockquote>
<pre>--
___________________________________________
Rubén Martínez-Buey. PhD student
Protein Function and Structure Dept. Lab. 352
Centro de Investigaciones Biológicas (CIB-CSIC)
C/ Velázquez, 144 28006 MADRID
Tlf: +34-91-561 18 00 ext. 4380
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