Hi,

I am an Undergraduate student at Centre for Biotechnology, anna  
University. Presently I am doing my project, and it involves 
Molcular  dynamics simulation of Candida rugosa Lipase in CCL4 
enviornment. I  have set up a cluster of 16 nodes using LAM and 
using GROMACS 3.1 for  the simulation.

I have just started off with the dynamics part, in which I have to  
generate a solvent box filled with CCL4. I tried to get the pdb 
file  of the ccl4 molecule and tried to generate the required .gro 
file. It  works but when i do the grompp step I get teh following 
error.

Fatal error: number of coordinates in coordinate file (b4em.gro,
             5391)
             does not match topology (1crl.top, 5126)

Please help me out with this. If you have a .gro file of the CCl4  
solvent which replaces the default spc216.gro, please send it to 
me.  And also instruct me on the steps I should follow to run this  
simulation in CCl4 box.

Venky


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