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Hi Rahul,
<p>I suggest you have a look at this web page:
<p>davapc1.bioch.dundee.ac.uk/programs/prodrg/gmx.pdf
<p>You´ll find there an excellent tutorial!
<br>Hope this help,
<br>with best regards,
<br>Ruben
<p>Rahul Banerjee wrote:
<blockquote TYPE=CITE>Dear All,
<br> I was trying to simulate
a protein with a
<br>ligand. But it was giving Fatal error because the
<br>topology of the was not known to pdb2gmx. Now I
<br>created topology for that molecule using PRODRG
<br>server. I am not getting where I have to add the
<br>topology(and with what extension) so that I can
<br>proceed.
<p> Thanking you in anticipation,
<p>With best wishes,
<br>Rahul Banerjee
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<pre>--
___________________________________________
Rubén Martínez-Buey. PhD student
Protein Function and Structure Dept. Lab. 352
Centro de Investigaciones Biológicas (CIB-CSIC)
C/ Velázquez, 144, 28006 MADRID (SPAIN)
Tlf: +34-91-561 18 00 ext. 4380
Fax: +34-91-562 75 18</pre>
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