<DIV>
<DIV>Dear Anton</DIV>
<DIV>I used VMD to view the .trr file, my problem was :</DIV>
<DIV>I first loaded .gro fiel, it was OK to see the atoms clearly, then when I loaded the .trr file, all the picture of atoms disappeared immediately.</DIV>
<DIV> </DIV>
<DIV>What is the cauese?</DIV>
<DIV> </DIV>
<DIV>Thanks</DIV>
<DIV> </DIV>
<DIV>Albert</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV><BR><BR><B><I>Anton Feenstra <feenstra@chem.vu.nl></I></B> wrote:</DIV>
<BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">Albert Sun wrote:<BR>> Dear Users,<BR>> When I simulated a simple 9 atoms system, simulation (mdrun) was completed, but the .trr picture show that atoms disappeared suddenly and can not see anything from the first frame.<BR>> <BR>> Appreciate if you could advise me how to modify (.mdp or .top or other files) so that I can see the picture from the first frame?<BR><BR>I don't know what you mean with '.trr picture'. What program(s) did you<BR>use to look at the first frame? Possible options would include ngmx,<BR>trjconv, vmd (not a Gromacs program).<BR><BR><BR>-- <BR>Groetjes,<BR><BR>Anton<BR>_____________ _______________________________________________________<BR>| | |<BR>| _ _ ___,| K. Anton Feenstra |<BR>| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |<BR>|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |<BR>| \_/ \_/ | | | Tel: +31
20 44 47608 - Fax: +31 20 44 47610 |<BR>| | Feenstra@chem.vu.nl - www.chem.vu.nl/~feenstra/ |<BR>| | "If You See Me Getting High, Knock Me Down" |<BR>| | (Red Hot Chili Peppers) |<BR>|_____________|_______________________________________________________|<BR><BR><BR>_______________________________________________<BR>gmx-users mailing list<BR>gmx-users@gromacs.org<BR>http://www.gromacs.org/mailman/listinfo/gmx-users<BR>Please don't post (un)subscribe requests to the list. Use the <BR>www interface or send it to gmx-users-request@gromacs.org.</BLOCKQUOTE></DIV><p><hr SIZE=1>
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