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<pre wrap=""><div class="moz-txt-sig"> Dear David,
Thanks a lot for your help but a strinking doubt remains in my mind: Sorry if it looks boring for you, but I am yet a dummie in gmx and the expressions "<< EOF q EOF" or "<< EOF" does not make sense for me. What does it means ????? I've already used make_ndx -f topol.tpr ... and than, trjconv -n .... My problem is just wich files to use after topol.tpr and trjconv -n and wich flags to use. I've tryed .gro but it did'not work.
Thanks a lot in advance.
Tanos C. C. Franca.
IME - Rio de Janeiro - Brazil
On Sat, 2003-09-13 at 19:52, Tanos wrote:
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<pre wrap=""><span class="moz-txt-citetags">> </span> Dear users,
<span class="moz-txt-citetags">> </span> I am trying without success to extract my protein from the water box
<span class="moz-txt-citetags">> </span>final .gro file generated in a dynamics. I have used trjconv but it's
<span class="moz-txt-citetags">> </span>not working because I don't know the rigth sequence of flags and
<span class="moz-txt-citetags">> </span>options to use. Does someone know how should I proceed ????
<span class="moz-txt-citetags">> </span> Lots of thanks in advance.
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<pre wrap=""><!---->make_ndx -f topol.tpr << EOF q EOF
trjconv -n << EOF
1
EOF
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