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<DIV><FONT face=Arial>Hi all,</FONT></DIV>
<DIV><FONT face=Arial> I'm trying to compile Gromacs on a
oMosix cluster using the mpi option and looking at the web page
procedures.</FONT></DIV>
<DIV><FONT face=Arial>I'm working on a RH8 distro.</FONT></DIV>
<DIV><FONT face=Arial>I've successfully installed with the rpm -Uvh option all
the rpm packages suggested.</FONT></DIV>
<DIV><FONT face=Arial>Then I've run ./configure --enable-float
--enable-shared --program-suffix=_mpi</FONT></DIV>
<DIV><FONT face=Arial>Until this point all seems to work fine but after the
"make"</FONT> <FONT face=Arial> command i receive these warnings and
errors:</FONT></DIV>
<DIV><FONT face=Arial> <FONT size=2>
<P>mpicc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include
-I../../include -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -O6
-fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double
-funroll-all-loops -c csettle.c -MT csettle.lo -MD -MP -MF .deps/csettle.TPlo
-fPIC -DPIC -o .libs/csettle.o</P>
<P>mpicc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include
-I../../include -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -O6
-fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double
-funroll-all-loops -c csettle.c -MT csettle.lo -MD -MP -MF .deps/csettle.TPlo -o
csettle.o >/dev/null 2>&1</P>
<P>/bin/sh ../../libtool --mode=link mpicc -O6 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -o
libmd_mpi.la -rpath /usr/local/gromacs/i686-pc-linux-gnu/lib -version-info 2:0:0
calcmu.lo calcvir.lo constr.lo coupling.lo dummies.lo ebin.lo edsam.lo ewald.lo
fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo ns.lo nsb.lo
nsgrid.lo pme.lo poisson.lo pppm.lo psgather.lo pull.lo pullinit.lo pullio.lo
pullutil.lo pssolve.lo psspread.lo shakef.lo sim_util.lo splittop.lo tables.lo
tgroup.lo update.lo vcm.lo wnblist.lo clincs.lo csettle.lo -L/usr/X11R6/lib
-lnsl -lnsl -lsrfftw_mpi -lsfftw_mpi -lsrfftw -lsfftw -lm -lXm -lXt -lSM -lICE
-lXext -lXp -lX11</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw.la' was moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw.la' was moved.</P>
<P>libtool: link: warning: `/usr/local/lib/libfreetype.la' seems to be moved</P>
<P>mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o
.libs/dummies.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o
.libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o
.libs/minimize.o .libs/ns.o .libs/nsb.o .libs/nsgrid.o .libs/pme.o
.libs/poisson.o .libs/pppm.o .libs/psgather.o .libs/pull.o .libs/pullinit.o
.libs/pullio.o .libs/pullutil.o .libs/pssolve.o .libs/psspread.o .libs/shakef.o
.libs/sim_util.o .libs/splittop.o .libs/tables.o .libs/tgroup.o .libs/update.o
.libs/vcm.o .libs/wnblist.o .libs/clincs.o .libs/csettle.o -Wl,--rpath
-Wl,/usr/local/lib -Wl,--rpath -Wl,/usr/X11R6/lib -Wl,--rpath -Wl,/usr/local/lib
-Wl,--rpath -Wl,/usr/X11R6/lib -L/usr/local/lib -L/usr/lesstif/lib
-L/usr/local/lib/mysql -L/usr/X11R6/lib -lnsl /usr/local/lib/libsrfftw_mpi.so
/usr/local/lib/libsfftw_mpi.so /usr/local/lib/libsrfftw.so
/usr/local/lib/libsfftw.so -lm /usr/X11R6/lib/libXm.so -lXt -lSM -lICE -lXext
-lXp -lX11 -Wl,-soname -Wl,libmd_mpi.so.2 -o .libs/libmd_mpi.so.2.0.0</P>
<P>(cd .libs && rm -f libmd_mpi.so.2 && ln -s libmd_mpi.so.2.0.0
libmd_mpi.so.2)</P>
<P>(cd .libs && rm -f libmd_mpi.so && ln -s libmd_mpi.so.2.0.0
libmd_mpi.so)</P>
<P>ar cru .libs/libmd_mpi.a calcmu.o calcvir.o constr.o coupling.o dummies.o
ebin.o edsam.o ewald.o fftgrid.o force.o ghat.o init.o mdatom.o mdebin.o
minimize.o ns.o nsb.o nsgrid.o pme.o poisson.o pppm.o psgather.o pull.o
pullinit.o pullio.o pullutil.o pssolve.o psspread.o shakef.o sim_util.o
splittop.o tables.o tgroup.o update.o vcm.o wnblist.o clincs.o csettle.o</P>
<P>ranlib .libs/libmd_mpi.a</P>
<P>creating libmd_mpi.la</P>
<P><STRONG><EM>.....AND THEN......</EM></STRONG></P><FONT size=2>
<P>mpicc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include
-I../../include -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -O6
-fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double
-funroll-all-loops -c `test -f grompp.c || echo './'`grompp.c</P>
<P>/bin/sh ../../libtool --mode=link mpicc -O6 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -o grompp
topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o sorting.o splitter.o
dum_parm.o readir.o add_par.o topexcl.o toputil.o topdirs.o grompp.o
../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -L/usr/X11R6/lib -lnsl -lnsl
-lsrfftw_mpi -lsfftw_mpi -lsrfftw -lsfftw -lm -lXm -lXt -lSM -lICE -lXext -lXp
-lX11</P>
<P>mkdir .libs</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw.la' was moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw.la' was moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw_mpi.la' was
moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsrfftw.la' was moved.</P>
<P>libtool: link: warning: library `/usr/local/lib/libsfftw.la' was moved.</P>
<P>mpicc -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-double -funroll-all-loops -o .libs/grompp topio.o toppush.o topcat.o
topshake.o convparm.o tomorse.o sorting.o splitter.o dum_parm.o readir.o
add_par.o topexcl.o toputil.o topdirs.o grompp.o ../mdlib/.libs/libmd_mpi.so
-L/usr/X11R6/lib -L/usr/local/lib/mysql -L/usr/lesstif/lib -L/usr/local/lib
../gmxlib/.libs/libgmx_mpi.so -lnsl /usr/local/lib/libsrfftw_mpi.so
/usr/local/lib/libsfftw_mpi.so /usr/local/lib/libsrfftw.so
/usr/local/lib/libsfftw.so -lm /usr/X11R6/lib/libXm.so /usr/lib/libfreetype.so
-lXft -lXrender -lfontconfig -lXt -lSM -lICE -lXext -lXp -lX11 -Wl,--rpath
-Wl,/usr/local/gromacs/i686-pc-linux-gnu/lib -Wl,--rpath -Wl,/usr/local/lib
-Wl,--rpath -Wl,/usr/X11R6/lib</P>
<P>/usr/bin/ld: cannot find -lXft</P>
<P>collect2: ld returned 1 exit status</P>
<P>hcc: No such file or directory</P>
<P>make[3]: *** [grompp] Error 1</P>
<P>make[3]: Leaving directory `/home/Application/gromacs-3.1.4/src/kernel'</P>
<P>make[2]: *** [all-recursive] Error 1</P>
<P>make[2]: Leaving directory `/home/Application/gromacs-3.1.4/src'</P>
<P>make[1]: *** [all] Error 2</P>
<P>make[1]: Leaving directory `/home/Application/gromacs-3.1.4/src'</P>
<P>make: *** [all-recursive] Error 1</P>
<P><FONT size=3></FONT> </P>
<P><FONT size=3>I've checked this</FONT><FONT size=2> libtool: link:
warning: library....<FONT size=3>and they are present at that
position</FONT>. </FONT></P>
<P><FONT size=3>Someone can help me whith this?</FONT></P>
<P><FONT size=3>Thanks in advance</FONT></P></FONT></FONT></FONT></DIV>
<DIV><FONT face=Arial></FONT> </DIV>
<DIV><FONT face=Arial><BR>#############<BR>Andrea Carotti<BR>Dip.
Farmaco-chimico<BR>Università di Bari<BR>via E. Orabona, 4<BR>CAP
70124<BR>e-mail : <A
href="mailto:and.carotti@farmchim.uniba.it">and.carotti@farmchim.uniba.it</A><BR>web:
<A
href="http://www.farmchim.uniba.it/samba/">http://www.farmchim.uniba.it/samba/</A><BR>phone:
+39080/5442638<BR>fax: +39080/5442230</FONT></DIV></BODY></HTML>