<DIV>Thanks, Ran,</DIV>
<DIV>I am using VMD uder Windows.</DIV>
<DIV>I could not find where should I start </DIV>
<DIV>set sel [atomselect top "Name" ]</DIV>
<DIV>$set sel radius</DIV>
<DIV> </DIV>
<DIV>Is it under Molecule or Graphics or Display?</DIV>
<DIV> </DIV>
<DIV>Appreciate you could advise me.</DIV>
<DIV> </DIV>
<DIV>Regards,</DIV>
<DIV> </DIV>
<DIV>Albert</DIV>
<DIV> </DIV>
<DIV><BR><BR><B><I>Ran Friedman <ran@hemi.tau.ac.il></I></B> wrote:</DIV>
<BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">Dear Albert,
<P>You can change the radii in VMD. Below as an example for sulphur atoms in proteins:
<P><TT>set sel [atomselect top "name SG or name SE"]</TT> <BR><TT>$sel set radius 1.775</TT>
<P>The name is the name of the atom in the topology file (in this case, it's a pdb file).
<P>Ran.
<P>Albert Sun wrote:
<BLOCKQUOTE TYPE="CITE">
<P>Dear users,
<P>I am using VMD to view .trr files from Gromacs, and found that all atoms appear in the same radius.
<P>I don't know if can change the radius of atoms when view the atoms, either by Gromacs or by VMD. Appreciate you can advise me.
<P>Many Thanks,
<P>Albert
<P>
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Ran Friedman
Laser laboratory for fast reactions in biology
Department of biochemistry
Faculty of life sciences
Tel-Aviv university
972-3-6409824
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