This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by GROMACS configure 3.1.4, which was generated by GNU Autoconf 2.52. Invocation command line was $ ./configure ## ---------- ## ## Platform. ## ## ---------- ## hostname = arg.fq uname -m = i686 uname -r = 2.4.20-8 uname -s = Linux uname -v = #1 Thu Mar 13 17:54:28 EST 2003 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH = /usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:./:/home/smv/bin:/usr/local/Acrobat5/bin/:/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:/opt/intel_idb_73/bin:/home/smv/bin:./:/home/smv/bin:/usr/local/Acrobat5/bin/:/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:/opt/intel_idb_73/bin:./:/home/smv/bin:/usr/local/Acrobat5/bin/:/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:/opt/intel_idb_73/bin:./:/home/smv/bin:/usr/local/Acrobat5/bin/:/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:/opt/intel_idb_73/bin:/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:/opt/intel_idb_73/bin:/opt/intel_cc_80/include:/opt/intel_cc_80/lib:/opt/intel_fc_80/include:/opt/intel_fc_80/lib ## ------------ ## ## Core tests. ## ## ------------ ## configure:1184: PATH=".;."; conftest.sh ./configure: line 1185: conftest.sh: command not found configure:1187: $? = 127 configure:1227: checking build system type configure:1245: result: i686-pc-linux-gnu configure:1252: checking host system type configure:1266: result: i686-pc-linux-gnu configure:1285: checking for a BSD compatible install configure:1334: result: /usr/bin/install -c configure:1345: checking whether build environment is sane configure:1388: result: yes configure:1421: checking for awk configure:1436: found /usr/bin/awk configure:1444: result: awk configure:1454: checking whether make sets ${MAKE} configure:1474: result: yes configure:2005: checking for C compiler version configure:2008: icc --version &5 8.0 configure:2011: $? = 0 configure:2013: icc -v &5 Version 8.0 configure:2016: $? = 0 configure:2018: icc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.0 Build 20031016Z Package ID: l_cc_p_8.0.055 Copyright (C) 1985-2003 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY icc: Command line error: no files specified; for help type "icc -help" configure:2021: $? = 1 configure:2041: checking for C compiler default output configure:2044: icc -O3 -axW -tpp7 conftest.c >&5 configure(2029) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:2047: $? = 0 configure:2076: result: a.out configure:2081: checking whether the C compiler works configure:2087: ./a.out configure:2090: $? = 0 configure:2105: result: yes configure:2112: checking whether we are cross compiling configure:2114: result: no configure:2117: checking for executable suffix configure:2119: icc -o conftest -O3 -axW -tpp7 conftest.c >&5 configure(2029) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:2122: $? = 0 configure:2144: result: configure:2150: checking for object suffix configure:2168: icc -c -O3 -axW -tpp7 conftest.c >&5 configure(2160) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:2171: $? = 0 configure:2190: result: o configure:2194: checking whether we are using the GNU C compiler configure:2215: icc -c -O3 -axW -tpp7 conftest.c >&5 configure(2204) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:2218: $? = 0 configure:2221: test -s conftest.o configure:2224: $? = 0 configure:2236: result: yes configure:2242: checking whether icc accepts -g configure:2260: icc -c -g conftest.c >&5 configure:2263: $? = 0 configure:2266: test -s conftest.o configure:2269: $? = 0 configure:2279: result: yes configure:2306: icc -c -O3 -axW -tpp7 conftest.c >&5 conftest.c(2): error: identifier "choke" is undefined choke me ^ conftest.c(3): error: expected a ";" compilation aborted for conftest.c (code 2) configure:2309: $? = 2 configure: failed program was: #ifndef __cplusplus choke me #endif configure:2415: checking for style of include used by make configure:2442: result: GNU configure:2448: checking dependency style of icc configure:2510: result: gcc3 configure:4065: checking how to run the C preprocessor configure:4091: icc -E conftest.c configure:4097: $? = 0 configure:4124: icc -E conftest.c configure(4121): catastrophic error: could not open source file "ac_nonexistent.h" #include ^ configure:4130: $? = 4 configure: failed program was: #line 4120 "configure" #include "confdefs.h" #include configure:4167: result: icc -E configure:4182: icc -E conftest.c configure:4188: $? = 0 configure:4215: icc -E conftest.c configure(4212): catastrophic error: could not open source file "ac_nonexistent.h" #include ^ configure:4221: $? = 4 configure: failed program was: #line 4211 "configure" #include "confdefs.h" #include configure:4600: checking whether icc accepts -O6 configure:4618: result: no configure:4626: checking whether icc accepts -O4 configure:4644: result: no configure:4652: checking whether icc accepts -O3 configure:4670: result: yes configure:4697: checking whether icc accepts -malign-double configure:4715: result: no configure:4963: checking whether icc accepts -funroll-all-loops configure:4981: result: no configure:5121: checking whether your compiler can handle assembly files (*.s) configure:5129: icc -c conftestasm.s configure:5132: $? = 0 configure:5135: result: yes configure:5187: checking whether as fully supports intel syntax SSE & 3DNow configure:5199: icc -c conftest.s configure:5202: $? = 0 configure:5204: result: yes configure:5379: checking for ident configure:5396: found /usr/bin/ident configure:5408: result: /usr/bin/ident configure:5418: checking whether the compiler supports ident configure:5426: icc -E -I/usr/local/include conftest.c configure:5432: $? = 0 configure:5444: result: yes configure:5543: checking for ld used by GCC configure:5607: result: /usr/bin/ld configure:5616: checking if the linker (/usr/bin/ld) is GNU ld GNU ld version 2.13.90.0.18 20030206 configure:5628: result: yes configure:5632: checking for /usr/bin/ld option to reload object files configure:5639: result: -r configure:5648: checking for BSD-compatible nm configure:5683: result: /usr/bin/nm -B configure:5687: checking whether ln -s works configure:5691: result: yes configure:5698: checking how to recognise dependant libraries configure:5886: result: file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib ) configure:6025: checking for dlfcn.h configure:6035: icc -E -I/usr/local/include conftest.c configure:6041: $? = 0 configure:6060: result: yes configure:6073: checking the maximum length of command line arguments configure:6121: result: 32768 configure:6129: checking command to parse /usr/bin/nm -B output from icc object configure:6214: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 conftest.c(9) : (col. 11) remark: main has been targeted for automatic cpu dispatch. configure:6217: $? = 0 configure:6221: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGISTW][ABCDGISTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p' \> conftest.nm configure:6224: $? = 0 configure:6276: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c conftstm.o >&5 configure:6279: $? = 0 configure:6317: result: ok configure:6321: checking for objdir configure:6336: result: .libs configure:6419: checking for ranlib configure:6434: found /usr/bin/ranlib configure:6443: result: ranlib configure:6493: checking for strip configure:6508: found /usr/bin/strip configure:6517: result: strip configure:6569: checking for file configure:6622: result: /usr/bin/file configure:6773: checking if icc static flag works conftest.c(1) : (col. 7) remark: main has been targeted for automatic cpu dispatch. configure:6796: result: yes configure:6810: checking if icc supports -fno-rtti -fno-exceptions configure:6837: result: yes configure:6852: checking for icc option to produce PIC configure:7043: result: -fPIC configure:7050: checking if icc PIC flag -fPIC works configure:7077: result: yes configure:7097: checking if icc PIC define -DPIC works configure:7124: result: yes configure:7136: checking if icc supports -c -o file.o configure:7177: result: yes configure:7202: checking whether the icc linker (/usr/bin/ld) supports shared libraries configure:7998: result: yes configure:8063: checking how to hardcode library paths into programs configure:8087: result: immediate configure:8101: checking whether stripping libraries is possible configure:8106: result: yes configure:8113: checking dynamic linker characteristics configure:8555: result: GNU/Linux ld.so configure:9188: checking if libtool supports shared libraries configure:9190: result: yes configure:9193: checking whether to build shared libraries configure:9214: result: no configure:9217: checking whether to build static libraries configure:9221: result: yes configure:9300: creating libtool configure:18141: checking whether ln -s works configure:18145: result: yes configure:18159: checking for special C compiler options needed for large files configure:18239: result: no configure:18245: checking for _FILE_OFFSET_BITS value needed for large files configure:18279: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18260): error: shift count is too large int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 ^ configure(18260): error: shift count is too large int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 ^ configure(18261): error: shift count is too large && LARGE_OFF_T % 2147483647 == 1) ^ configure(18261): error: shift count is too large && LARGE_OFF_T % 2147483647 == 1) ^ compilation aborted for conftest.c (code 2) configure:18282: $? = 2 configure: failed program was: #line 18253 "configure" #include "confdefs.h" #include /* Check that off_t can represent 2**63 - 1 correctly. We can't simply define LARGE_OFF_T to be 9223372036854775807, since some C++ compilers masquerading as C compilers incorrectly reject 9223372036854775807. */ #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62)) int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 && LARGE_OFF_T % 2147483647 == 1) ? 1 : -1]; #ifdef F77_DUMMY_MAIN # ifdef __cplusplus extern "C" # endif int F77_DUMMY_MAIN() { return 1; } #endif int main () { ; return 0; } configure:18324: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18316) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:18327: $? = 0 configure:18330: test -s conftest.o configure:18333: $? = 0 configure:18344: result: 64 configure:18354: checking for _LARGE_FILES value needed for large files configure:18388: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18380) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:18391: $? = 0 configure:18394: test -s conftest.o configure:18397: $? = 0 configure:18453: result: no configure:18465: checking for _LARGEFILE_SOURCE value needed for large files configure:18491: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18484): error: identifier "fseeko" is undefined return !fseeko; ^ compilation aborted for conftest.c (code 2) configure:18494: $? = 2 configure: failed program was: #line 18473 "configure" #include "confdefs.h" #include #ifdef F77_DUMMY_MAIN # ifdef __cplusplus extern "C" # endif int F77_DUMMY_MAIN() { return 1; } #endif int main () { return !fseeko; ; return 0; } configure:18528: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18520) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:18531: $? = 0 configure:18534: test -s conftest.o configure:18537: $? = 0 configure:18548: result: 1 configure:18562: checking for fseeko configure:18586: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(18578) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:18589: $? = 0 configure:18592: test -s conftest configure:18595: $? = 0 configure:18605: result: yes configure:18621: Using built-in math library with intel compiler configure:19255: checking for sfftw.h configure:19276: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(19268) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:19279: $? = 0 configure:19282: test -s conftest.o configure:19285: $? = 0 configure:19289: result: yes configure:19324: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(19316) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:19327: $? = 0 configure:19330: test -s conftest.o configure:19333: $? = 0 configure:19492: checking for main in -lsfftw configure:19518: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lsfftw >&5 configure(19510) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:19521: $? = 0 configure:19524: test -s conftest configure:19527: $? = 0 configure:19538: result: yes configure:19967: checking for srfftw.h configure:19988: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(19980) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:19991: $? = 0 configure:19994: test -s conftest.o configure:19997: $? = 0 configure:19999: result: yes configure:20021: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lsrfftw -lsfftw >&5 configure(20013) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:20024: $? = 0 configure:20027: test -s conftest configure:20030: $? = 0 configure:20913: checking for rpc/rpc.h configure:20923: icc -E -I/usr/local/include conftest.c configure:20929: $? = 0 configure:20948: result: yes configure:20956: checking for xdr_float in -lnsl configure:20989: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lsrfftw -lsfftw >&5 configure(20981) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:20992: $? = 0 configure:20995: test -s conftest configure:20998: $? = 0 configure:21009: result: yes configure:21040: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lsrfftw -lsfftw >&5 configure(21032) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21043: $? = 0 configure:21046: test -s conftest configure:21049: $? = 0 configure:20913: checking for rpc/xdr.h configure:20923: icc -E -I/usr/local/include conftest.c configure:20929: $? = 0 configure:20948: result: yes configure:20956: checking for xdr_float in -lnsl configure:21009: result: yes configure:21040: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21032) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21043: $? = 0 configure:21046: test -s conftest configure:21049: $? = 0 configure:21071: checking for working memcmp configure:21122: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21090) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21125: $? = 0 configure:21127: ./conftest configure:21130: $? = 0 configure:21142: result: yes configure:21146: checking return type of signal handlers configure:21180: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(21172) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21183: $? = 0 configure:21186: test -s conftest.o configure:21189: $? = 0 configure:21199: result: void configure:21209: checking for vprintf configure:21252: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21236) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21255: $? = 0 configure:21258: test -s conftest configure:21261: $? = 0 configure:21271: result: yes configure:21278: checking for _doprnt configure:21321: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21305) : (col. 1) remark: main has been targeted for automatic cpu dispatch. /tmp/iccdcNtV2.o(.text+0x52): In function `main.J': : undefined reference to `_doprnt' /tmp/iccdcNtV2.o(.text+0x73): In function `main.A': : undefined reference to `_doprnt' configure:21324: $? = 1 configure: failed program was: #line 21284 "configure" #include "confdefs.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _doprnt (); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _doprnt (); char (*f) (); #ifdef F77_DUMMY_MAIN # ifdef __cplusplus extern "C" # endif int F77_DUMMY_MAIN() { return 1; } #endif int main () { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__doprnt) || defined (__stub____doprnt) choke me #else f = _doprnt; #endif ; return 0; } configure:21340: result: no configure:21353: checking if malloc debugging is wanted configure:21374: result: no configure:21381: checking for strcasecmp configure:21424: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21408) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21427: $? = 0 configure:21430: test -s conftest configure:21433: $? = 0 configure:21443: result: yes configure:21456: checking for strdup configure:21499: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(21483) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21502: $? = 0 configure:21505: test -s conftest configure:21508: $? = 0 configure:21518: result: yes configure:21530: checking for X configure:21745: result: libraries /usr/X11R6/lib, headers /usr/X11R6/include configure:21902: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw -L/usr/X11R6/lib -lX11 >&5 configure(21894) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:21905: $? = 0 configure:21908: test -s conftest configure:21911: $? = 0 configure:22049: checking for gethostbyname configure:22092: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22076) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22095: $? = 0 configure:22098: test -s conftest configure:22101: $? = 0 configure:22111: result: yes configure:22244: checking for connect configure:22287: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22271) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22290: $? = 0 configure:22293: test -s conftest configure:22296: $? = 0 configure:22306: result: yes configure:22372: checking for remove configure:22415: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22399) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22418: $? = 0 configure:22421: test -s conftest configure:22424: $? = 0 configure:22434: result: yes configure:22500: checking for shmat configure:22543: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22527) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22546: $? = 0 configure:22549: test -s conftest configure:22552: $? = 0 configure:22562: result: yes configure:22637: checking for IceConnectionNumber in -lICE configure:22670: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include -L/usr/X11R6/lib conftest.c -lICE -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22662) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22673: $? = 0 configure:22676: test -s conftest configure:22679: $? = 0 configure:22690: result: yes configure:22723: checking for Motif configure:22765: icc -c -O3 -axW -tpp7 -I/usr/X11R6/include -I/usr/local/include conftest.c >&5 configure(22757) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22768: $? = 0 configure:22771: test -s conftest.o configure:22774: $? = 0 configure:22856: icc -o conftest -O3 -axW -tpp7 -I/usr/X11R6/include -I/usr/local/include -L/usr/X11R6/lib conftest.c -lSM -lICE -lXm -lXt -lX11 -lnsl -lnsl -lsrfftw -lsfftw >&5 configure(22848) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22859: $? = 0 configure:22862: test -s conftest configure:22865: $? = 0 configure:22952: result: libraries in default path, headers in default path configure:22965: checking for libXext and libXp configure:22986: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include -I/usr/X11R6/include -L/usr/X11R6/lib conftest.c -lSM -lICE -lX11 -lnsl -lnsl -lsrfftw -lsfftw -lXm -lXt -lXext -lXp >&5 configure(22978) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:22989: $? = 0 configure:22992: test -s conftest configure:22995: $? = 0 configure:22997: result: yes configure:23110: checking for limits.h configure:23120: icc -E -I/usr/local/include conftest.c configure:23126: $? = 0 configure:23145: result: yes configure:23110: checking for strings.h configure:23120: icc -E -I/usr/local/include conftest.c configure:23126: $? = 0 configure:23145: result: yes configure:23110: checking for unistd.h configure:23120: icc -E -I/usr/local/include conftest.c configure:23126: $? = 0 configure:23145: result: yes configure:23162: checking for unistd.h configure:23197: result: yes configure:23209: checking for icc option to accept ANSI C configure:23272: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(23254) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23275: $? = 0 configure:23278: test -s conftest.o configure:23281: $? = 0 configure:23298: result: none needed configure:23306: checking for an ANSI C-conforming const configure:23376: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(23322) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23379: $? = 0 configure:23382: test -s conftest.o configure:23385: $? = 0 configure:23395: result: yes configure:23405: checking for ANSI C header files configure:23419: icc -E -I/usr/local/include conftest.c configure:23425: $? = 0 configure:23512: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -L/usr/X11R6/lib -lnsl -lnsl -lsrfftw -lsfftw -lXm -lXt -lSM -lICE -lXext -lXp -lX11 >&5 configure(23499) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23515: $? = 0 configure:23517: ./conftest configure:23520: $? = 0 configure:23533: result: yes configure:23549: checking for sys/types.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for sys/stat.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for stdlib.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for string.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for memory.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for strings.h configure:23580: result: yes configure:23549: checking for inttypes.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for stdint.h configure:23561: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23564: $? = 0 configure:23567: test -s conftest.o configure:23570: $? = 0 configure:23580: result: yes configure:23549: checking for unistd.h configure:23580: result: yes configure:23590: checking for size_t configure:23617: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(23640): warning #279: controlling expression is constant if ((size_t *) 0) ^ configure(23639) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23620: $? = 0 configure:23623: test -s conftest.o configure:23626: $? = 0 configure:23636: result: yes configure:23648: checking whether struct tm is in sys/time.h or time.h configure:23674: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure(23666) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23677: $? = 0 configure:23680: test -s conftest.o configure:23683: $? = 0 configure:23693: result: time.h configure:23703: checking for uid_t in sys/types.h configure:23723: result: yes configure:23737: checking for inline configure:23754: icc -c -O3 -axW -tpp7 -I/usr/local/include conftest.c >&5 configure:23757: $? = 0 configure:23760: test -s conftest.o configure:23763: $? = 0 configure:23774: result: inline configure:23792: checking if the C compiler supports inline assembly configure:23813: icc -o conftest -O3 -axW -tpp7 -I/usr/local/include conftest.c -L/usr/X11R6/lib -lnsl -lnsl -lsrfftw -lsfftw -lXm -lXt -lSM -lICE -lXext -lXp -lX11 >&5 configure(23805) : (col. 1) remark: main has been targeted for automatic cpu dispatch. configure:23816: $? = 0 configure:23819: test -s conftest configure:23822: $? = 0 configure:23824: result: yes configure:24132: creating ./config.status ## ----------------------- ## ## Running config.status. ## ## ----------------------- ## This file was extended by config.status (GROMACS 3.1.4) 2.52, executed with CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = > ./config.status on arg.fq config.status:24675: creating Makefile config.status:24675: creating src/Makefile config.status:24675: creating src/gmxlib/Makefile config.status:24675: creating include/Makefile config.status:24675: creating include/types/Makefile config.status:24675: creating src/mdlib/Makefile config.status:24675: creating src/kernel/Makefile config.status:24675: creating src/tools/Makefile config.status:24675: creating src/ngmx/Makefile config.status:24675: creating src/contrib/Makefile config.status:24675: creating scripts/Makefile config.status:24675: creating admin/Makefile config.status:24675: creating share/Makefile config.status:24675: creating share/tutor/Makefile config.status:24675: creating share/tutor/gmxdemo/Makefile config.status:24675: creating share/tutor/nmr1/Makefile config.status:24675: creating share/tutor/nmr2/Makefile config.status:24675: creating share/tutor/water/Makefile config.status:24675: creating share/tutor/speptide/Makefile config.status:24675: creating share/template/Makefile config.status:24675: creating share/top/Makefile config.status:24675: creating share/html/Makefile config.status:24675: creating share/html/images/Makefile config.status:24675: creating share/html/online/Makefile config.status:24675: creating man/Makefile config.status:24675: creating man/man1/Makefile config.status:24767: creating src/config.h ## ----------------- ## ## Cache variables. ## ## ----------------- ## ac_cv_build=i686-pc-linux-gnu ac_cv_build_alias=i686-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_env_CC_set=set ac_cv_env_CC_value=icc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O3 -axW -tpp7' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set=set ac_cv_env_F77_value=ifort ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func__doprnt=no ac_cv_func_connect=yes ac_cv_func_fseeko=yes ac_cv_func_gethostbyname=yes ac_cv_func_memcmp_working=yes ac_cv_func_remove=yes ac_cv_func_shmat=yes ac_cv_func_strcasecmp=yes ac_cv_func_strdup=yes ac_cv_func_vprintf=yes ac_cv_have_x='have_x=yes ac_x_includes=/usr/X11R6/include ac_x_libraries=/usr/X11R6/lib' ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_rpc_rpc_h=yes ac_cv_header_rpc_xdr_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=i686-pc-linux-gnu ac_cv_host_alias=i686-pc-linux-gnu ac_cv_lib_ICE_IceConnectionNumber=yes ac_cv_lib_nsl_xdr_float=yes ac_cv_lib_sfftw___main=yes ac_cv_motif_includes= ac_cv_motif_libraries= ac_cv_objext=o ac_cv_path_IDENT=/usr/bin/ident ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CPP='icc -E' ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_make_make_set=yes ac_cv_struct_tm=time.h ac_cv_sys_file_offset_bits=64 ac_cv_sys_large_files=no ac_cv_sys_largefile_CC=no ac_cv_sys_largefile_source=1 ac_cv_type_signal=void ac_cv_type_size_t=yes ac_cv_type_uid_t=yes am_cv_CC_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )' lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file='/lib/libc.so.6 /lib/libc-2.3.2.so' lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_MAGIC_CMD=/usr/bin/file lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_gnu_ld=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGISTW][ABCDGISTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=32768 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGISTW][ABCDGISTW]*\\)[ ][ ]*\\(\\)\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2\\3 \\3/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ## ------------ ## ## confdefs.h. ## ## ------------ ## #define PACKAGE "gromacs" #define VERSION "3.1.4" #define SOFTWARE_SQRT #define USE_X86_SSE_AND_3DNOW #define HAVE_IDENT #define HAVE_DLFCN_H 1 #define _FILE_OFFSET_BITS 64 #define _LARGEFILE_SOURCE 1 #define HAVE_FSEEKO 1 #define HAVE_LIBSFFTW 1 #define FFTW_NAME_SFFTW #define HAVE_RPC_RPC_H 1 #define HAVE_LIBNSL 1 #define HAVE_RPC_XDR_H 1 #define HAVE_LIBNSL 1 #define RETSIGTYPE void #define HAVE_VPRINTF 1 #define HAVE_STRCASECMP 1 #define HAVE_STRDUP 1 #define HAVE_MOTIF #define HAVE_LIMITS_H 1 #define HAVE_STRINGS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define USE_X86TRUNC configure: exit 0 ## ----------------------- ## ## Running config.status. ## ## ----------------------- ## This file was extended by config.status (GROMACS 3.1.4) 2.52, executed with CONFIG_FILES = CONFIG_HEADERS = src/config.h CONFIG_LINKS = CONFIG_COMMANDS = > ./config.status on arg.fq config.status:24767: creating src/config.h config.status:24908: src/config.h is unchanged