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<div class=Section1>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>I figured out why my Booleans were not
working.<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><span class=SpellE><font size=2 color=navy face=Arial><span
style='font-size:10.0pt;font-family:Arial;color:navy'>g_analyze</span></font></span><font
size=2 color=navy face=Arial><span style='font-size:10.0pt;font-family:Arial;
color:navy'> –<span class=SpellE>nosubav</span> <o:p></o:p></span></font></p>
<p class=MsoNormal><span class=SpellE><font size=2 color=navy face=Arial><span
style='font-size:10.0pt;font-family:Arial;color:navy'>g_hbond</span></font></span><font
size=2 color=navy face=Arial><span style='font-size:10.0pt;font-family:Arial;
color:navy'> –<span class=SpellE>noda</span><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>It wasn’t obvious to me. Sorry for
the extra postings. The <o:p></o:p></span></font></p>
<p class=MsoNormal><span class=SpellE><font size=2 color=navy face=Arial><span
style='font-size:10.0pt;font-family:Arial;color:navy'>g_analyze</span></font></span><font
size=2 color=navy face=Arial><span style='font-size:10.0pt;font-family:Arial;
color:navy'> –<span class=SpellE>ee</span> seems to still be a problem.<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Thanks<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Ilya<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='margin-left:.5in'><font size=2 face=Tahoma><span
style='font-size:10.0pt;font-family:Tahoma'>-----Original Message-----<br>
<b><span style='font-weight:bold'>From:</span></b> gmx-users-admin@gromacs.org
[mailto:gmx-users-admin@gromacs.org] <b><span style='font-weight:bold'>On
Behalf Of </span></b>Ilya Chorny<br>
<b><span style='font-weight:bold'>Sent:</span></b> </span></font><st1:date
Month="2" Day="23" Year="2004"><font size=2 face=Tahoma><span style='font-size:
10.0pt;font-family:Tahoma'>Monday, February 23, 2004</span></font></st1:date><font
size=2 face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'> </span></font><st1:time
Hour="13" Minute="23"><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma'>1:23 PM</span></font></st1:time><font size=2 face=Tahoma><span
style='font-size:10.0pt;font-family:Tahoma'><br>
<b><span style='font-weight:bold'>To:</span></b> gmx-users@gromacs.org<br>
<b><span style='font-weight:bold'>Subject:</span></b> [gmx-users] g_hbond
gromacs 3.2</span></font></p>
<p class=MsoNormal style='margin-left:.5in'><font size=3 face="Times New Roman"><span
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>----------------------------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Dr. Ilya Chorny<span
style='mso-spacerun:yes'>
</span>Department of Pharmaceutical Chemistry<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>DOE/SLOAN Postdoctoral Researcher<span
style='mso-spacerun:yes'> </span></span></font><st1:place><st1:PlaceType>University</st1:PlaceType>
of <st1:PlaceName>California</st1:PlaceName></st1:place>, <st1:City><st1:place>San
Francisco</st1:place></st1:City><o:p></o:p></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Tel:<span style='mso-spacerun:yes'>
</span>(415)-476-6875<span
style='mso-spacerun:yes'>
</span>600 16th st<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Fax:<span style='mso-spacerun:yes'>
</span>(415)502-4222<span
style='mso-spacerun:yes'>
</span></span></font><st1:place><st1:City>San Francisco</st1:City>, <st1:State>CA</st1:State>
<st1:PostalCode>94107</st1:PostalCode></st1:place><o:p></o:p></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Cell: (408)887-8496<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'><span
style='mso-spacerun:yes'>
</span>Email: ichorny@maxwell.ucsf.edu<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>----------------------------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 color=navy
face="Courier New"><span style='font-size:10.0pt;color:navy'>Hello <o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span><o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>g_hbond
does not allow me to set –da value to FALSE<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>i.e<span
style='mso-spacerun:yes'> </span>g_hbond –da no<span
style='mso-spacerun:yes'> </span>does not work<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span><o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>All
the postings I have made in the last few days have been in regards to 3.2.<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>Recap:<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>g_analyze
–subav no – doesn’t work<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>g_analyze
–ee<span style='mso-spacerun:yes'> </span>-- Segmentation Fault<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>Thanks<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoPlainText style='margin-left:.5in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:2'> </span>Ilya<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.0in'><font size=2 color=navy
face=Arial><span style='font-size:10.0pt;font-family:Arial;color:navy'><span
style='mso-tab-count:1'> </span><o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>----------------------------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Dr. Ilya Chorny<span
style='mso-spacerun:yes'>
</span>Department of Pharmaceutical Chemistry<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>DOE/SLOAN Postdoctoral Researcher<span
style='mso-spacerun:yes'> </span></span></font><st1:place><st1:PlaceType>University</st1:PlaceType>
of <st1:PlaceName>California</st1:PlaceName></st1:place>, <st1:City><st1:place>San
Francisco</st1:place></st1:City><o:p></o:p></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Tel:<span style='mso-spacerun:yes'>
</span>(415)-476-6875<span
style='mso-spacerun:yes'>
</span>600 16th st<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Fax:<span style='mso-spacerun:yes'>
</span>(415)502-4222<span
style='mso-spacerun:yes'>
</span></span></font><st1:place><st1:City>San Francisco</st1:City>, <st1:State>CA</st1:State>
<st1:PostalCode>94107</st1:PostalCode></st1:place><o:p></o:p></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>Cell: (408)887-8496<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'><span
style='mso-spacerun:yes'>
</span>Email: ichorny@maxwell.ucsf.edu<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'>----------------------------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoPlainText style='margin-left:1.5in'><font size=2 face="Courier New"><span
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
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