<DIV>also got the same problem, then I was told to make a " -box x " and then center the molecule "-center x/2". it works fine, at least on gmx 3.2 </DIV>
<DIV> </DIV>
<DIV>"Are u the police?" </DIV>
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<DIV><BR><B><I>Li Xiaoyi <xiaoyi.li@nat.oru.se></I></B> wrote:</DIV>
<BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">Hi all,<BR><BR>I am back.<BR><BR>I tried to put two molecules into a box of water. I used editconf -f -o<BR>-box 4 4 4 -c and then genbox -cp -cs -p -o. But whatever box size I<BR>used, the two molecules are always outside the box. why? What should I<BR>do?<BR><BR>Thanks,<BR>Xiaoyi<BR><BR>_______________________________________________<BR>gmx-users mailing list<BR>gmx-users@gromacs.org<BR>http://www.gromacs.org/mailman/listinfo/gmx-users<BR>Please don't post (un)subscribe requests to the list. Use the <BR>www interface or send it to gmx-users-request@gromacs.org.</BLOCKQUOTE><p><br><hr size=1><A HREF="http://it.yahoo.com/mail_it/foot/?http://it.mail.yahoo.com/"><b>Yahoo! Mail</a></b>: 6MB di spazio gratuito, 30MB per i tuoi allegati, l'antivirus, il filtro Anti-spam