<DIV>Hi, Nunolf,</DIV>
<DIV> </DIV>
<DIV>Thank you very mcuh for your reply. I am newer and just start learning Gromacs.</DIV>
<DIV>In my Windows XP, I added a line SET PATH = C:\ gromacs\bin in autoexec.NT file</DIV>
<DIV>( i installed gmx under C: \gromacs), then restart my PC. When i used pdb2gmx comand to check if it works, it did not.I think I did not set it correctly, but i don't know why. Could you kindly give me a more detailed instruction?</DIV>
<DIV> </DIV>
<DIV>Thank you for your time.</DIV>
<DIV> </DIV>
<DIV>Sincerely,</DIV>
<DIV> </DIV>
<DIV>Xiaobing<BR><BR><B><I>"Nuno R. L. Ferreira" <nunolf@ci.uc.pt></I></B> wrote:</DIV>
<BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">Hi Tian<BR><BR>This question was already answered in this miling list.<BR><BR>On Thursday 18 March 2004 03:47 pm, xiaobing tian wrote:<BR>> Dear Gromacs userers,<BR>><BR>> I have installed Windows version of the Gromacs in my Windows XP system.<BR>> Since cpp already is in the bin directory, I edited the .mdp files and<BR>> specify the location of cpp by \bin\cpp. But when i run grompp, it says :"<BR>> can not find cpp". What should I do?<BR>><BR>> Which command in Window is equivalent to "which cpp" in Linux?<BR>><BR>> I have to copy the binary files (e.g. pdb2gmx, grompp etc) into my work<BR>> directory in order to run them. Is it possible to specify or make a link to<BR>> the bin directory in Windows?<BR><BR>Suppose you have installed gmx under<BR>C:\gromacs<BR><BR>1- set Path variable environment to include C:\gromacs\bin<BR>2- restart PC<BR>3-
define cpp in your mdp files as : cpp = C:\gromacs\bin\cpp<BR><BR>and you are done<BR><BR>Nuno<BR><BR>_______________________________________________<BR>gmx-users mailing list<BR>gmx-users@gromacs.org<BR>http://www.gromacs.org/mailman/listinfo/gmx-users<BR>Please don't post (un)subscribe requests to the list. Use the <BR>www interface or send it to gmx-users-request@gromacs.org.</BLOCKQUOTE><BR><BR>Xiaobing Tian Ph.D.<br>Department of Microbiology and Immunology<br>Thomas Jefferson University<br>1025 Walnut St., Suite 420<br>Philadelphia, PA19107<br>Phone: 215-955-1364 (Lab)<p><font face=arial size=-1>Do you Yahoo!?<br>
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