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I am sorry if my questions seem to be always the same but I have again
difficulty to keep a group of atom planar after minimisation (the first
time I succed).
<br>You could find a description of my molecule on this site with my
.itp file.
<br><A HREF="http://www.ESI.UMontreal.CA/~p0661390/gromacs_planar.htm">http://www.ESI.UMontreal.CA/~p0661390/gromacs_planar.htm</A>
<p>What g_di (I use ffG43a1) or what exclusions I have to add to keep my
atoms planar ?
<br>I already treid to exclude my oxygens and/or my HH.
<br>My charges are an "average" of charges given by gaussian and charges
taken fron different groups of the .rtp library. Could it be a problem
here ?
<br>
<pre>--
Mathieu Coincon PhD Student
Universite De Montreal/Departement de biochimie
Pavillon Roger Gaudry Local D345
(514).343.6111 #5352</pre>
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