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<P><FONT SIZE=2 FACE="Arial">Dear ALL:</FONT>
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<P><FONT SIZE=2 FACE="Arial">I have installed a MPI version of Gromacs 3.2.</FONT>
<BR><FONT SIZE=2 FACE="Arial">When I run : </FONT>
<BR> <B> <FONT COLOR="#FF0000" SIZE=2 FACE="Arial">grompp_d -f file.mdp -c file.gro -p file.top -o file.tpr -v</FONT></B>
<BR><FONT SIZE=2 FACE="Arial">The output is file.tpr (for 1 node). Then I run:</FONT>
<BR> <FONT SIZE=2 FACE="Arial"></FONT><B> <FONT COLOR="#FF0000" SIZE=2 FACE="Arial">dmpirun -np 4 mdrun_d -s file.tpr -o file.trr -x file.xtc -e file.edr -multi -v</FONT></B>
<BR><FONT SIZE=2 FACE="Arial">And I will have 4 .trr, 4.xtc and 4.edr files.</FONT>
<BR><FONT SIZE=2 FACE="Arial">This does not look normal to me. </FONT>
<BR><FONT SIZE=2 FACE="Arial">Is there something that I did not do right? I want to have one for each output from mdrun_d.</FONT>
<BR><FONT SIZE=2 FACE="Arial">How can I do that? I run MD of huge systems and the output files are very big and are killing me.</FONT>
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<P><FONT SIZE=2 FACE="Arial">Warm regards and thanks in advance for any help.</FONT>
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<P><FONT SIZE=2 FACE="Arial">Adama</FONT>
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<P><FONT SIZE=2 FACE="Arial">Adama Tandia</FONT>
<BR><FONT SIZE=2 FACE="Arial">Modeling & Simulation</FONT>
<BR><FONT SIZE=2 FACE="Arial">Corning INC</FONT>
<BR><FONT SIZE=2 FACE="Arial">Corning, NY 14831 USA</FONT>
<BR><FONT SIZE=2 FACE="Arial">Tel: 607 248 1036</FONT>
<BR><FONT SIZE=2 FACE="Arial">Fax: 607 974 3405</FONT>
<BR><A HREF="www.corning.com"><U><FONT COLOR="#0000FF" SIZE=2 FACE="Arial">www.corning.com</FONT></U></A>
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