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<DIV><FONT face="Times New Roman">Dear all,</FONT></DIV>
<DIV><FONT face="Times New Roman"></FONT> </DIV>
<DIV><FONT face="Times New Roman">I am using GROMACS to analysis my DNA mol, but
I have a question can not solve,can you help me ?<BR>After I create a dna.pdb
file ,I can not make the gromacs konwn where are H-bonds between two residiew ,
so though i can make the full mdrun ,but there are no h-bond in it
.</FONT></DIV>
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<DIV><FONT face="Times New Roman">Another problem is that how can i make the
gromacs konwn my H atom in my PDB file if i do not want to use -ignh
?</FONT></DIV>
<DIV><FONT face="Times New Roman"></FONT> </DIV>
<DIV><FONT face="Times New Roman">Thanks for advance</FONT></DIV>
<DIV><FONT face="Times New Roman"></FONT> </DIV>
<DIV><FONT face="Times New Roman">Hailong</FONT></DIV></BODY></HTML>