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As a suggestions, may be change mk_angndx to be more like make_ndx where
you can use the -n and -o switches. I am following the dihedrals in
a particular molecule type in my simulation, so to generate the
appropriate dihedral index need to change the tpr file using tpbconv and
select it to output the file for the molecule in interest then use
mk_angndx. No idea on how these things are working under the hood
etc, just thought I might suggest it.<br><br>
Catch ya,<br>
<x-sigsep><p></x-sigsep>
<b>Dr. Dallas Warren<br>
</b><i>Research Fellow<br>
</i>Department of Pharmaceutical Biology and Pharmacology<br>
Victorian College of Pharmacy, Monash University<br>
381 Royal Parade, Parkville VIC 3010<br>
<font color="#0000FF"><u>dallas.warren@vcp.monash.edu.au<br>
</u></font>+61 3 9903 9083<br>
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