; ; Input file ; title = Yo ; a string cpp = /lib/cpp ; c-preprocessor dt = 0.002 ; time step nsteps = 2000000 ; number of steps nstcomm = 1 ; reset c.o.m. motion nstxout = 1000 ; write coords nstvout = 1000 ; write velocities nstlog = 100 ; print to logfile nstenergy = 100 ; print energies nstlist = 10 ; update pairlist nstxtcout = 1000 ns_type = grid ; pairlist method coulombtype = PME rlist = 1.00 ; cut-off for ns rvdw = 1.00 ; cut-off for vdw rcoulomb = 1.00 ; cut-off for coulomb Tcoupl = berendsen ; temperature coupling ref_t = 298 ;298 tc-grps = system ;system tau_t = 0.1 ;0.1 Pcoupl = berendsen ; pressure bath Pcoupltype = isotropic ; pressure geometry tau_p = 2.0 2.0 ; p-coupoling time compressibility = 4.5e-5 4.5e-5 ref_p = 1.0 1.0 gen_vel = no ; generate initial velocities gen_temp = 298 ; initial temperature gen_seed = 19903 ; random seed integrator = md