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<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">Dear all.<?xml:namespace prefix = o ns =
"urn:schemas-microsoft-com:office:office" /><o:p></o:p></FONT></FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>I’m new with gromacs.<SPAN
style="mso-spacerun: yes"> </SPAN>I plan to simulate kappa opioid receptor
model in </FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>a lipid membrane.<SPAN
style="mso-spacerun: yes"> </SPAN>I prepared all the necessary input
files.<SPAN style="mso-spacerun: yes"> </SPAN>Eventually
during</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>EM I get some strange results, and it goes only
for 15 -20</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>steps.<SPAN style="mso-spacerun: yes">
</SPAN>If anyone has mdp example file for the protein-membrane system
</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">EM and MD please send me one.<SPAN
style="mso-spacerun: yes"> </SPAN>Thank you in advance. <SPAN
style="mso-spacerun: yes"> </SPAN><SPAN
style="mso-spacerun: yes"> </SPAN><SPAN
style="mso-spacerun: yes"> </SPAN><SPAN
style="mso-spacerun: yes"> </SPAN></FONT></FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">(128DPPC membrane <SPAN
style="mso-spacerun: yes"> </SPAN>with GPCR)
<o:p></o:p></FONT></FONT></SPAN></P></FONT></DIV></BODY></HTML>