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<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>Hi all!</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>I need to simulate rhodopsin in lipid bilayer with
G protein + GDP</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>I’m not certain if the topology file <SPAN
style="mso-spacerun: yes"> </SPAN>(charges) <SPAN
style="mso-spacerun: yes"> </SPAN>for GDP that I have obtained using
PRODRG</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>server is right for me.<SPAN
style="mso-spacerun: yes"> </SPAN>I plan to use (ffgmx_lipids.tar.gz)
<SPAN style="mso-spacerun: yes"> </SPAN>ffgmx force field modified
</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>to use with lipids from gromacs site.<SPAN
style="mso-spacerun: yes"> </SPAN>(At the beginning I did a short
simulation of<SPAN style="mso-spacerun: yes"> </SPAN>GDP
</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>in box of water only and everything seemed
fine).<SPAN style="mso-spacerun: yes"> </SPAN>Please give me some comment
and</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">thank you in advice. <?xml:namespace prefix
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