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Hello,<br>
<br>
Regarding the first problem, check
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/pipermail/gmx-users/2004-May/010519.html">http://www.gromacs.org/pipermail/gmx-users/2004-May/010519.html</a><br>
<br>
Ran.<br>
<br>
Sandeep Somani wrote:<br>
<blockquote type="cite"
cite="mid03b101c4f3f3$37fd34c0$1e05d90a@somanidesktop">
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<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2">Hi all</font></span></div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2">i am facing a problem which was posted on the
mailing list almost a year back: </font></span></div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2"><font color="#000000">> [gmx-users]
g_mindist<br>
> Fri Dec 12 14:12:01 CET 2003 </font></font></span></div>
<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2"><font color="#000000">> Dear all,</font></font></span></div>
<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2"><font color="#000000">> When I try to
count the number of contacts of two groups, the output<br>
> file numcont.xvg always shows 0 even when i set the distance is 4nm<br>
> which is the same as my box. Why? What's the problem?</font></font></span></div>
<div><span class="407421813-06012005"><font face="Arial"
color="#0000ff" size="2"><font color="#000000">> Xiaoyi</font></font></span></div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial" size="2">in
addition i dont think the option " -o atm-pair.out " is working
correctly. </font></span></div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial" size="2">could
not find any helpful postings .. </font></span><span
class="407421813-06012005"><font face="Arial" size="2">any updates on
this would be helpful .. </font></span></div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial" size="2">am
using <span class="407421813-06012005"><font face="Arial" size="2"> </font></span></font></span></div>
<div><span class="407421813-06012005"><font face="Arial" size="2"><span
class="407421813-06012005"><font face="Arial" size="2">:-) VERSION
3.2.1 (-:<br>
</font></span></font></span></div>
<div><span class="407421813-06012005"><font face="Arial" size="2">thnx</font></span></div>
<div><span class="407421813-06012005"><font face="Arial" size="2">sandeep
</font></span></div>
<div><span class="407421813-06012005"><font face="Arial" size="2">
<div> </div>
<div align="left">
<div align="left"><span class="441544308-20082004"><font face="Arial"
color="#0000ff" size="2">---</font></span></div>
<div><span class="441544308-20082004"><font face="Arial"
color="#0000ff" size="2">Research Associate</font></span></div>
<div><span class="441544308-20082004"><font face="Arial"
color="#0000ff" size="2">Computational Biology Group</font></span></div>
<div><span class="441544308-20082004"><font face="Arial"><font
color="#0000ff"><font size="2">Bioinformatics Institute<span
class="097225009-20082004"> </span></font></font></font></span></div>
<div><span class="441544308-20082004"><font face="Arial"><font
color="#0000ff"><font size="2"><span class="097225009-20082004">Singapore</span></font></font></font></span></div>
<div> </div>
<div>
<span class="441544308-20082004"><font face="Arial" color="#0000ff"
size="2"><a href="http://www.bii.a-star.edu.sg/%7Essomani">http://www.bii.a-star.edu.sg/~ssomani</a></font></span></div>
</div>
</font></span></div>
<div> </div>
<div> </div>
<div><span class="407421813-06012005"><font face="Arial" size="2"> </font></span></div>
<div> </div>
<span class="407421813-06012005"><font color="#0000ff">
<div><font face="Arial"><font size="2"><span
class="407421813-06012005"> </span></font></font></div>
</font></span><br>
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
------------------------------------------------------
Ran Friedman
Laser Laboratory for Fast Reactions in Biology
Department of Biochemistry
Faculty of Life Sciences
Tel-Aviv University
Tel. +972-3-6409824
Fax. +972-3-6409875
------------------------------------------------------
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