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editconf -f speptide -o out -bt tric -box 3 3 10 -angles 90 90 120<br>
genbox -cp out -cs -p speptide -o b4em<br>
grompp...<br>
trjconv -f b4em.gro -o b4em2.gro -ur compact -s em -pbc inbox<br>
vmd b4em2.gro<br>
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Michal Kolinski wrote:
<blockquote cite="mid001201c4fc9f$d7d3fb50$be01000a@hades" type="cite">
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<p class="MsoNormal" style="margin: 0cm 0cm 0pt;"><span lang="EN-US">Hi
all.<o:p></o:p></span></p>
<p class="MsoNormal" style="margin: 0cm 0cm 0pt;"><span lang="EN-US">I
need to simulate a GPCR in a membrane.</span></p>
<p class="MsoNormal" style="margin: 0cm 0cm 0pt;"><span lang="EN-US">I
wonder is there <span style=""> </span>easy way to build a hexagonal
box for the</span></p>
<p class="MsoNormal" style="margin: 0cm 0cm 0pt;"><span lang="EN-US">system.<span
style=""> </span>Please give me some comment on this, and thank you
in advance.</span></p>
<p class="MsoNormal" style="margin: 0cm 0cm 0pt;"><span lang="EN-US">Michal
<span style=""> </span></span></p>
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