; In this topology include file, you will find position restraint
; entries for all the heavy atoms in your original pdb file.
; This means that all the protons which were added by pdb2gmx are
; not restrained.

[ position_restraints ]
; atom  type      fx      fy      fz
  1119     1  1000  1000  1000
  1121     1  1000  1000  1000
  1123     1  1000  1000  1000
  1125     1  1000  1000  1000
  1126     1  1000  1000  1000
  1127     1  1000  1000  1000
  1129     1  1000  1000  1000
  1130     1  1000  1000  1000
  1131     1  1000  1000  1000