<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
<title></title>
</head>
<body bgcolor="#ffffff" text="#000000">
Hi there,<br>
this is my first queries on the mailing list.<br>
First:<br>
is there any planned workshop on molecular dynamics/bionformatic?<br>
Second:<br>
I am running gromacs on protein-membrane interaction. The steps for the
MD are:<br>
em for the protein in water -> lie the protein on the membrane and
run em and then md.<br>
grompp leads to a warning about system charged +5. I use genion to
neutralise them (considering the solvent in the option) but<br>
it yields to the system charged +2.5e-5, very small but still charged.
Is it normal? Do you suggest to neutralise first the protein and then
add it to the membrane?<br>
Any suggestion are very welcome,<br>
thanks<br>
<br>
Regards<br>
<br>
andrea<br>
<div class="moz-signature">-- <br>
-------------------------------<br>
Andrea Spitaleri <br>
Dulbecco Telethon Institute<br>
c/o DIBIT Scientific Institute<br>
Biomolecular NMR, 1B4<br>
Via Olgettina 58<br>
20132 Milano (Italy)<br>
<a href="http://www.spreadfirefox.com/?q=affiliates&id=0&t=85"><img
alt="Get Firefox!" title="Get Firefox!"
src="cid:part1.01050003.07060207@hsr.it" border="0"></a><br>
-------------------------------
</div>
</body>
</html>