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Hi there,<br>
I downloaded the ffgmx_lipids from
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/topologies/uploaded_force_fields/ffgmx_lipids.tar.gz">http://www.gromacs.org/topologies/uploaded_force_fields/ffgmx_lipids.tar.gz</a><br>
and followd the indications how to use it. <br>
When I run pdb2gmx I get this error:<br>
pdb2gmx -f C.pdb -o C.gro<br>
Opening library file /usr/local/share/gromacs/top/ffgmx.rtp<br>
Residue 50Fatal error: Atom type OWT4 (residue HO4) not found in
atomtype database<br>
<br>
and in fact in ffgmx.atp is missing the OWT4 atom type which, instead,
it is presents in the old ffgmx.atp (coming with gromacs 3.2.1)<br>
If I keep the old ffgmx.atp, pdb2gmx runs fine but I am wondering if it
is a right procedure.<br>
I could not fin anything about it on the gromacs web page.<br>
<br>
Thanks<br>
Regards<br>
<br>
andrea<br>
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-------------------------------<br>
Andrea Spitaleri <br>
Dulbecco Telethon Institute<br>
c/o DIBIT Scientific Institute<br>
Biomolecular NMR, 1B4<br>
Via Olgettina 58<br>
20132 Milano (Italy)<br>
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