SHELL=/bin/sh
HOME=/home/gfuentes

GMXHOME=$(HOME)/local

BIN=$(GMXHOME)/i686-pc-linux-gnu/bin

INCLUDELOCAL=$(HOME)/local/include
LIBLOCAL=$(HOME)/local/lib

LIBFFTW=$(LIBLOCAL)
LIBMPI=$(LIBLOCAL)

CPP    = /lib/cpp
CC=/home/gfuentes/local/bin/mpicc

CCFLAGS= -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include  -I/usr/include -I/usr/include/Xm -I../../include -I./include -DGMXLIBDIR=\"$(GMXHOME)/share/gromacs/top\" -I$(INCLUDELOCAL)/include -I/usr/include/libxml2  -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -I/usr/include/libxml2 -c 

EXE = rpmdrun

OBJ = glaasje.o do_gct.o gctio.o genalg.o init_sh.o ionize.o md.o rpmdrun.o relax_sh.o xutils.o dpmisc.o mt19937ar_one.o mt19937ar_two.o update.o

rpmdrun: $(OBJ)
	$(CC) -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -I/usr/include/libxml2 -o rpmdrun $(OBJ) -L/usr/lib -L/usr/X11R6/lib/ /usr/X11R6/lib/libXm.a -L/home/gfuentes/local/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl /home/gfuentes/local/lib/libsrfftw.a /home/gfuentes/local/lib/libsfftw.a /usr/lib/libxml2.so /home/gfuentes/local/lib/libmpi.a /home/gfuentes/local/lib/liblam.a -lz -lm -lXm

glaasje.o : glaasje.c
	$(CC) $(CCFLAGS) -c glaasje.c

gctio.o: gctio.c
	$(CC) $(CCFLAGS)  gctio.c		

do_gct.o : do_gct.c
	$(CC) $(CCFLAGS)  do_gct.c

genalg.o : genalg.c
	$(CC) $(CCFLAGS)  genalg.c

init_sh.o : init_sh.c
	$(CC) $(CCFLAGS)  init_sh.c

ionize.o : ionize.c
	$(CC) $(CCFLAGS)  ionize.c

md.o : md.c
	$(CC) $(CCFLAGS)  md.c

rpmdrun.o : rpmdrun.c
	$(CC) $(CCFLAGS)  rpmdrun.c

relax_sh.o : relax_sh.c
	$(CC) $(CCFLAGS)  relax_sh.c

xutils.o : xutils.c
	$(CC) $(CCFLAGS)  xutils.c

dpmisc.o : dpmisc.c
	$(CC) $(CCFLAGS)  dpmisc.c

update.o : update.c
	$(CC) $(CCFLAGS)  update.c

install:
	/bin/cp $(EXE) $(BIN)
clean:
	/bin/rm -f $(EXE) $(OBJ) *~ include/*~