Hi Rodolfo,<br>
<br>
Reading the help (g_rmsf -h) tells that "with the option -od the root
mean square deviation with respect to the reference structure is
calculated", which is quite different from the root mean square
fluctuation of an atom around its average position, which is what you
get with -o.<br>
<br>
Cheers,<br>
<br>
Tsjerk<br><br><div><span class="gmail_quote">On 10/5/05, <b class="gmail_sendername">mekanix</b> <<a href="mailto:mekanix@aruba.it">mekanix@aruba.it</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi to all gmx users,<br>I'm a new gromax user and I use it for my thesis.<br>I have a question for you about the g_rmsf tool...<br>I can't understand which is the difference between<br>using the -o and -od options for the outputs file...
<br>I mean... which kind od results are given by the 2 options<br>and which are the differences between them?<br><br>Another question is: one of those two results is maybe<br>the time average of g_rms per residue?<br><br>
Thank's to all<br>Rodolfo.<br>_______________________________________________<br>gmx-users mailing list<br><a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://www.gromacs.org/mailman/listinfo/gmx-users">
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</a>.<br></blockquote></div><br><br clear="all"><br>-- <br><br>Tsjerk A. Wassenaar, M.Sc.<br>Groningen Biomolecular Sciences and Biotechnology Institute (GBB)<br>Dept. of Biophysical Chemistry<br>University of Groningen<br>
Nijenborgh 4<br>9747AG Groningen, The Netherlands<br>+31 50 363 4336<br>