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<P><FONT SIZE=2>Thanks David for your response.<BR>
<BR>
I have decane water interface and protein is solvated in water phase of the system.<BR>
I am using GROMOS-96 for protein and GROMACS force field for decane which is actually provided by you.<BR>
I started off with decane to make susre that I have a correct density using GROMACS force field<BR>
and then I have protein topoly of GORMOS-96 using pdb2gmx. I managed to build the system using genbox.<BR>
I believe ther sould not be any problem using this approach. All I need to figure out how to merge these two topology files.<BR>
Any suggestions?<BR>
<BR>
With regards,<BR>
<BR>
Abu<BR>
<BR>
<BR>
<BR>
> Hi All,<BR>
><BR>
> I have two topology files of two different force fields. I am having<BR>
> problems with merging them. Can anyone advise me regarding the<BR>
> problem?<BR>
This is generally not a good idea, unless you have positive evidence<BR>
otherwise. But please provide more info. What kind of topologies?<BR>
<BR>
David.<BR>
________________________________________________________________________<BR>
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,<BR>
Dept. of Cell and Molecular Biology, Uppsala University.<BR>
Husargatan 3, Box 596, 75124 Uppsala, Sweden<BR>
phone: 46 18 471 4205 fax: 46 18 511 755<BR>
spoel@xray.bmc.uu.se spoel@gromacs.org <A HREF="http://xray.bmc.uu.se/~spoel">http://xray.bmc.uu.se/~spoel</A><BR>
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