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Dear Sir,<br>
It is not the gmx problem. May be the problem
is with your machine memory. I am able to create a box of size 14 x 14
x 14 (nm). It works fine. I hope it helps you a bit.<br>
<br>
Rahul Karyappa<br>
NCL, India<br><font face="Arial" size="2"><TABLE STYLE="border-color: blue; border-left: 1px solid blue; padding-left: 5px;"><tbody><TR><TD><b><i>-- Original Message --</i></b><br>From: <zhengbs@jlu.edu.cn><br>To: <gmx-users@gromacs.org><br>Date: Wed, 19 Oct 2005 00:12:58 +0800<br>Subject: [gmx-users] A problem about genbox<br><br>Dear gmx-users:<br>I
am using genbox to solve a protein modeled by modeller.After pdb2gmx
and editconf,there are 335 residues with 3204 atoms,and box size is
6.103 * 6.196 * 6.546.Then i " genbox -cp out -cs -p APE1547LID -o b4em
",when it progressed to <br>" GRoups of Organic Molecules in ACtion for Science<br> Containing 3204 atoms in 335 residues<br> Initialising van der waals distances...<br> Reading solvent configuration<br> ""<br> solvent configuration contains 648 atoms in 216 residues <br>
",the cursor is flashing but program was seemed not to move on.Is it
too big for gmx to generate a box for this protein,or it will take a
long time?<br><br>Thanking in advance<br><br><br>_______________________________________________<br>gmx-users mailing list<br>gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please don't post (un)subscribe requests to the list. Use the<br>www interface or send it to gmx-users-request@gromacs.org.<br></TD></TR></tbody></TABLE></font></BODY></HTML>
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