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<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">Hi all.<?xml:namespace prefix = o ns =
"urn:schemas-microsoft-com:office:office" /><o:p></o:p></FONT></FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>Is there an easy way to visualize tric box in
VMD</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>I used something like this:</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><FONT size=3><FONT
face="Times New Roman"><SPAN lang=EN-US>trjconv -f <SPAN
style="mso-spacerun: yes"> </SPAN>xxx.gro<SPAN
style="mso-spacerun: yes"> </SPAN>-o <SPAN
style="mso-spacerun: yes"> </SPAN>xxx <SPAN
style="mso-spacerun: yes"> </SPAN>-</SPAN><?xml:namespace prefix =
st1 ns = "urn:schemas-microsoft-com:office:smarttags"
/><st1:City><st1:place><SPAN lang=EN-US>ur</SPAN></st1:place></st1:City><SPAN
lang=EN-US> tric<SPAN style="mso-spacerun: yes">
</SPAN></SPAN></FONT></FONT></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>but it gave me deformed
structure.</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>I’m using gromacs 3.2,</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>Box vectors: 8 4 4 </FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>Angels: <SPAN
style="mso-spacerun: yes"> </SPAN>90 90 60</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
face="Times New Roman" size=3>Please give me some comment on
this,</FONT></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><FONT
size=3><FONT face="Times New Roman">Than you in advance.
<o:p></o:p></FONT></FONT></SPAN></P></FONT></DIV><p><table cellpadding=8><tr><td style="background: white; color:#909090; font-family: sans-serif;"><span style="font-size: 10pt; font-weight: bold; color=#404040">Ten list został przeskanowany przez program <a href="http://www.mks.com.pl"><span style="color: red; font-size:10pt;">ArcaMail</span></a></span><br><span style="font-size: 8pt; font-weight: normal;">Silnik (2005-06-03/2005-10-21)</span></td><td style="background: white; color:#909090; font-family: sans-serif;"><span style="font-size: 10pt; font-weight: bold; color=#404040">This message has been scanned by <a href="http://www.mks.com.pl"><span style="color: red; font-size:10pt;">ArcaMail</span></a></span><br><span style="font-size: 8pt; font-weight: normal;">Engine (2005-06-03/2005-10-21)</span></td></tr></table></p></BODY></HTML>