<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; "><DIV><DIV>Hi,</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>We really don't care much about MS Windows, since it's not particularly suited for high-performance computing tasks running in the background. To tell the truth, the main reason why we've ported the code to native windows (i.e., not cygwin) is to enable simulations in distributed computing environments like folding@home.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>If you want a nice graphical user interface combined with Unix environment I'd recommend Mac OS X.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Cheers,</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Erik</DIV><DIV><BR><DIV><DIV>On Nov 22, 2005, at 4:37 PM, Yang Ye wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"> frankly, neither. 3.1.2 is outdated and 3.2.1 has bugs that may affect you. if you would like to run gromacs in parallel, Windows' version is not suitable. If you are not familiar with text editing on linux, you can modify the pdb on Windows and upload it to linux (with WinSCP). IMHO, Gromacs for Windows is not up to the standard of production. It suits for temporary use on analysis or small runs. <BR> <BR> After all, running gromacs on Windows also requires *NIX skills because it runs under simulated POSIX environment. <BR> <BR> Everything needs to have a start and now is the time. =)<BR> <BR> Yang Ye<BR> <BR> gaurav gupta wrote: <BLOCKQUOTE cite="mid58ab15df0511220648t4392a590ubf4fa8ef206059d9@mail.gmail.com" type="cite"> <DIV>thanks for the guidance...just one more help which version will be better to install is it gromacs 3.1.2 or gromacs3.2.1</DIV> <DIV>i wanted to know this since i am not fimiliar with linux and i would like to work in windows for my pdb files</DIV> <DIV>thanks in advance<BR> <BR> </DIV> <DIV><SPAN class="gmail_quote">On 11/22/05, <B class="gmail_sendername">Иванов Миша</B> <<A href="mailto:grasp2@mail.ru">grasp2@mail.ru</A>> wrote:</SPAN> <BLOCKQUOTE class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0px 0px 0px 0.8ex; padding-left: 1ex;">Dear Gaurav,<BR> <BR> The version of Gromacs for Windows is situated here:<BR> <A href="http://www.gromacs.org/download/binaries.php?cpu=i686&os=MS_Windows">http://www.gromacs.org/download/binaries.php?cpu=i686&os=MS_Windows</A><BR> <BR> Choose the version, compiled by Erik Lindahl.<BR> <BR> Sincerely yours,<BR> Misha Ivanov<BR> -----Original Message-----<BR> From: gaurav gupta < <A href="mailto:gaurav.cgupta@gmail.com">gaurav.cgupta@gmail.com</A>><BR> To: <A href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</A><BR> Date: Mon, 21 Nov 2005 18:52:27 +0530<BR> Subject: [gmx-users] version for windows <BR> <BR> > hi,<BR> > i just came to know that there is gromacs which can work with windows xp<BR> > OS...i tried to get that compatible version but got confused...can any one<BR> > suggest which version of GROMACS will run with windows Xp and from where can <BR> > i get it?<BR> > thanks in advance<BR> ><BR> > --<BR> > "gaurav gupta"<BR> > M.TECH( B.P.T),<BR> > U.I.C.T, Matunga,Mumbai<BR> ><BR> ><BR> > _______________________________________________ <BR> > gmx-users mailing list<BR> > <A href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</A><BR> > <A href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users </A><BR> > Please don't post (un)subscribe requests to the list. Use the<BR> > www interface or send it to <A href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</A>.<BR> ><BR> <BR> _______________________________________________ <BR> gmx-users mailing list<BR> <A href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</A><BR> <A href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</A><BR> Please don't post (un)subscribe requests to the list. Use the <BR> www interface or send it to <A href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</A>.<BR> </BLOCKQUOTE> </DIV> <BR> <BR clear="all"> <BR> -- <BR> "gaurav gupta"<BR> M.TECH( B.P.T),<BR> U.I.C.T , Matunga,Mumbai<BR> <PRE wrap=""><HR size="4" width="90%">_______________________________________________
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www interface or send it to <A class="moz-txt-link-abbreviated" href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</A>.</PRE></BLOCKQUOTE> <BR> <DIV class="moz-signature">-- <BR> <I>Regards,</I><BR> Yang Ye<BR> <SMALL><I>Computational Biology Lab<BR> School of Biological Sciences<BR> Nanyang Technological University<BR> Singapore<BR> Tel: 6316-2884<BR> </I></SMALL> </DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">gmx-users mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Please don't post (un)subscribe requests to the list. Use the<SPAN class="Apple-converted-space"> </SPAN></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">www interface or send it to <A href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</A>.</DIV> </BLOCKQUOTE></DIV><BR><DIV> <SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><DIV>-----------------------------------------------------------</DIV><DIV>Erik Lindahl <<A href="mailto:lindahl@sbc.su.se">lindahl@sbc.su.se</A>></DIV><DIV>Assistant Professor, Stockholm Bioinformatics Center</DIV><DIV>Stockholm University, SE 106 91 Stockholm</DIV><DIV>Phone: +46 8 5537 8564 Fax: +46 8 5537 8214</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV><BR class="khtml-block-placeholder"></DIV><BR class="Apple-interchange-newline"></SPAN> </DIV><BR></DIV></DIV></BODY></HTML>