<div>thanks Mr.Larsson..</div>
<div>but i checked the pdb file for such errors and couldnt find any. there are four chains in my pdb file. and each chain is named separately and all chains are separated by ter tags properly. is there any other possibility of this error?
</div>
<div>thanks again..</div>
<div>reg.</div>
<div>tand<br><br> </div>
<div><span class="gmail_quote">On 12/14/05, <b class="gmail_sendername">Per Larsson</b> <<a href="mailto:per.larsson@sbc.su.se">per.larsson@sbc.su.se</a>> wrote:</span>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Check your pdb-file using a text editor of some sort.<br>Probably you have the same chainID for some residues with another (or
<br>possibly none) chain ID in between. All residues belonging to the same<br>chain need to have the same chain identifier.<br><br>Regards<br>/Per<br><br><br>Pradeep Kota wrote:<br><br>> hi<br>> i'm new to gromacs<br>
> pdb2gmx gives an error<br>> i have a two subunit protein<br>> pdb2gmx says<br>> fatal error : use of same chain marker A in non sequential residues<br>> and it displays the atom number also.<br>> i checked the pdb file and the two domains are file and i visualised
<br>> them using rasmol. wat do i do?<br>> thanks for any help<br>> tand<br>><br>>------------------------------------------------------------------------<br>><br>>_______________________________________________
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<br>Per Larsson<br>PhD Student<br>Stockholm Bioinformatics Center<br>+46 (0) 8 55378577<br>+46 (0) 733 461467<br><a href="mailto:per.larsson@sbc.su.se">per.larsson@sbc.su.se</a><br><a href="http://www.sbc.su.se">www.sbc.su.se
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