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Hi Liu,<br>
I explain it a bit better. Basicaly I create my system
protein/membrane with vmd, not taking in account possible clashes.
Afterwards, I use the gromacs tools, genbox, in order to solvate the
protein with the membrane as well described here:<br>
<a class="moz-txt-link-freetext" href="http://www.dddc.ac.cn/embo04/practicals/9_16.htm">http://www.dddc.ac.cn/embo04/practicals/9_16.htm</a><br>
genbox remove in such way eventual clashes.<br>
<br>
I hope this is a bit clearer<br>
<br>
Regards<br>
<br>
andrea<br>
<br>
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-------------------------------<br>
Andrea Spitaleri <br>
Dulbecco Telethon Institute<br>
c/o DIBIT Scientific Institute<br>
Biomolecular NMR, 1B4<br>
Via Olgettina 58<br>
20132 Milano (Italy)<br>
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