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<DIV><FONT face=Arial size=2>Hi,</FONT></DIV>
<DIV><FONT face=Arial size=2>I have just installed Gromacs-3.3 successfully. I
want to calculate RMSD value between two pdb files. I already wrote a program to
select some parts in pdb files. For example I select 1,6,7,15... CA Atoms in
first pdb file and 4,8,9,10... CA Atoms in second pdb file. Ofcourse the list
size is equal and I want to superimpose these proteins and find RMSD value. Is
it possible to send me an example how I can do this with
Gromacs-3.3.</FONT></DIV>
<DIV><FONT face=Arial size=2>Thanks in advance...</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Alper Kucukural</FONT></DIV>
<DIV><FONT face=Arial size=2>Phd in Biological Sciences and
Bioengineering</FONT></DIV>
<DIV><FONT face=Arial size=2>Sabanci University</FONT></DIV>
<DIV><FONT face=Arial size=2>Istanbul/Turkiye</FONT></DIV>
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