Thanks for reply,<br>
<br>
<br>
Well before that let me tell you about my system that just now I discussed with administrator. <br>
<br>
I have 16 node grid. (In last mail I said that I have 8 nodes but now I can use all 16 nodes)<br>
<br>
In details:<br>
<br>
Operating System is Redhat WS 3.0 and 16 nodes are excutation host
which are installed by N1Grid Engine 6.0 (i.e. N1GE 6.0 )<br>
<br>
Master N1GE is SF440 which is having Solaries 9.0 operating system and N1GE 6.0 Software. <br>
<br>
Also when I typed "uname -a" on command line I got following information: <br>
<br>
Linux cdfd-grid-master 2.4.21-19.ELsmp #1 SMP Thu Aug 12 23:22:47 EDT 2004 x86_64 x86_64 x86_64 GNU/Linux<br>
<br>
I want to install Gromacs parallel version. Will
installation on master N1GE is sufficient or I have to install it on
all the nodes ?<br>
<br>
Second thing is master N1GE is having Solaries 9.0 operating System. So
will it be possible to install Gromacs-3.3 on Solaries 9.0 ?<br>
<br>
Let me tell you that I am not master of Computer Adminitration area
but still I wish to workout this installation. Therefore I am following
your instructions and suggestions...<br>
<br><br><div><span class="gmail_quote">On 12/28/05, <b class="gmail_sendername">David van der Spoel</b> <<a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Dhananjay wrote:<br><br>> Hello all,<br>><br>> I have tried and successfully installed Gromacs-3.3 on single node.<br>><br>> Now I want to install parallel gromacs.<br><br><br>start (on the master node) with make distclean, then start from the
<br>configure step again. It could be that the mpi library you have<br>installed is not in the proper binary format (i.e. 32 vs 64 bits).<br><br>><br>> when I tried it on the same node, I got error as follows:<br>>
<br>> /usr/lib/gcc-lib/x86_64-redhat-linux/3.2.3/../../../../lib64/libmpi.a:<br>> could not read symbols: Bad value<br>> collect2: ld returned 1 exit status<br>> mpicc: No such file or directory<br>> make[4]: *** [libgmx_mpi.la] Error 1
<br>> make[4]: Leaving directory<br>> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src/gmxlib'<br>> make[3]: *** [all-recursive] Error 1<br>> make[3]: Leaving directory<br>> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-
3.3/src/gmxlib'<br>> make[2]: *** [all-recursive] Error 1<br>> make[2]: Leaving directory<br>> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'<br>> make[1]: *** [all] Error 2<br>> make[1]: Leaving directory
<br>> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'<br>> make: *** [all-recursive] Error 1<br>><br>><br>> I could not understand the meaning of these erre. Will anybody please<br>> tell me ?
<br>><br>> Presently I can use 8 nodes. Is there any specific procedure/steps of<br>> installation on nodes/grid ?<br>> I mean to say should I start installation from master node ?<br>><br>> 2 out og 8 nodes has
gromacs-3.3 alrady installed.<br>><br>> Dhananjay<br>><br>>------------------------------------------------------------------------<br>><br>>_______________________________________________<br>>gmx-users mailing list
<br>><a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>><a href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</a><br>>Please don't post (un)subscribe requests to the list. Use the
<br>>www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>><br><br><br>--<br>David.<br>________________________________________________________________________
<br>David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,<br>Dept. of Cell and Molecular Biology, Uppsala University.<br>Husargatan 3, Box 596, 75124 Uppsala, Sweden<br>phone: 46 18 471 4205 fax: 46 18 511 755
<br><a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a> <a href="mailto:spoel@gromacs.org">spoel@gromacs.org</a> <a href="http://xray.bmc.uu.se/~spoel">http://xray.bmc.uu.se/~spoel</a><br>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
<br><br>_______________________________________________<br>gmx-users mailing list<br><a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users
</a><br>Please don't post (un)subscribe requests to the list. Use the<br>www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br></blockquote></div><br>